BAC Information

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BAC

Clone NameMSMg01-340J01
Chromosome3 (Build37)
Map Location 108,260,679 - 108,261,035
singlet/doubletsinglet
Overlap gene5330417C22Rik
Upstream geneKcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars
Downstream gene1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340J01.T7 (MSMg01no340_j01.b1)MSMg01-340J01.TJ (MSMg01no340_j01.g1)
ACCAG454573AG454574
length744843
length of high quality
(start - end)		358 (45 - 402)---
definitionCHROMAT_FILE: MSMg01no340_j01.b1 PHD_FILE: MSMg01no340_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:36 2005CHROMAT_FILE: MSMg01no340_j01.g1 PHD_FILE: MSMg01no340_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGAGGTTTTGCGTAAAAGTAGTTTGTTTTTTGTTTTTTGTTTTT
TTTAAATAAGTACGAAATTGGCTTCTAGCCTCCTGTGTGAGGGCAGGGGC
AGCTGGGAGGTTTTCTGGTCAGATACAGGCTTTCAGCTCATGATGTCTTT
AGAAGGGGGCTGTGGTCTGAGGGACAGTCCTCATGGCAGCCTCGACTTAT
TTCTCCTGGGTAATAAGTTGGAGCATAGAGCAGTGGACAGTCTGAGGGCA
AGGTGGGTGAAGCCTGTGTAAGAAAACACACACAAGAAAAAAAAATCCGC
AAAAAAACGCAAAGTGTGTGTGTGGGGGGGGGGTGTGTTTNGTTCTGTTT
TTNNCNNNNATCTNNTTTCCTTCTCTTTTNNTGGTTTTNTTCTCCCTTCN
NACTTCTTTTTTTTTTTCCCTTTACTTGCCCCTTTGCCCTTTTTCTTTCC
TCCCCTACTGCTTTTGCCACNTATTCCTCCCCTTTTCCTATGATCCTTCT
AAGAACCGGGTTAGTCCATGTATCCTTTCCTTTGGCTTTTACTCGTCAGC
GTTTTCTGGTTTGCCCTATGAACTATTCCTCTCCTTTGGGTTGAGCCTCT
TTCCTCAGATGCCTAACATTAATTTTGTATTTTTATACTCTCTCCTCTCA
TAATTTTTTTCGGTTGTCCGATTGTTCTGGCGTGCTCCCATATT

CCCTTATTCGATGCAAAGCGGGTGCTGGAGGTCGCATTGACGTCTAXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGTTTGTTTCGTTTGT
TTGTTTGTTTGTTTGTATTTTTTTTAACAATATCAGGTTTAATCAGTGTT
CGCAGTATGGTGGGTCATTGTTATATAGAAATAAGTAGATGGAGTGGGAA
GCCAGGTGACATAGCATGAGCTTAGGCGACTTTATGACAAGTGGATACAT
TTGTAGAGCCCGAATCGAGAGTACATTCGCAAGGAGATAGTTTCCGGAAA
GGTGGTAATGGTGCTGCTTCCAATGGACTAACTTTGGAAGGTTGTGTAAC
GCTTGACCTAAGGGGTTAATGTGGTTATGAATCATATTGTGAAGGCGAAA
AAATATATTGCAAATTAATGAAAACTCTCTCTTTGCTTTTTTATTTTATT
GGTAAAAATAAAAAATCTTTGTTTTGTTTTAGAGAATACGATCGTTTAAA
AACTGCACGTCTTTCCCCCCCATCCGTCGCCTCTTATAATTGTAAACCTC
TTTGCATGCTTTCTAATTTTATAACCTTTGGGGGACTTCTAATTTCTTCG
ACTTTGTGGGCCTTTTGATCCTTCTAGATAGTTTAAATATATAAACATCT
TTTCTTTCTTCCCCTTAAAAAATTTTTCCCCCTCCTGTTTCTCTAATATA
CTTTTAGATGATTTCTACCTCTTTCTGCAGAAATTTAAAAAATTTTGTGT
GGTTCGTGCGCCATTTTAAATGAATTCCTTTTTACACCTCTTTTCGGGCA
CTTCTTTCTGAAGGGGTTATTACACAATTCTTGTTTGTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_j01.b1 MSMg01no340_j01.b1 CHROMAT_FILE:
MSMg01no340_j01.b1 PHD_FILE: MSMg01no340_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:36 2005
         (358 letters)



>mm_chr3_108260552_108261303
          Length = 752

 Score =  489 bits (253), Expect = e-143
 Identities = 331/367 (90%), Gaps = 24/367 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagaggttttgc-gtaaaagtagtttgttttttgttttttgttttttttaaat 63
           |||||||||| |||||| | ||||||||||||||||||||||      ||||||||||||
Sbjct: 484 gaattcttagcggtttt-cagtaaaagtagtttgttttttgt------ttttttttaaat 432

                                                                       
Query: 64  aagtacgaaattggcttctagcctcctgtgtgagggcaggggcagctgggaggttttctg 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 431 aagtacgaaattggcttctagcctcctgtgtgagggcgggggcagctgggaggttttctg 372

                                                                       
Query: 124 gtcagatacaggctttcagctcatgatgtctttagaagggggctgtggtctgagggacag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtcagatacaggctttcagctcatgatgtctttagaagggggctgtggtctgagggacag 312

                                                                       
Query: 184 tcctcatggcagcctcgacttatttctcctgggtaataagttggagcatagagcagtgga 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 311 tcctcatggcagcctcgacttatttctcctgggtaataagttggagcagagagcagtgga 252

                                                                       
Query: 244 cagtctgagggcaaggtgggtgaagcctgtgtaagaaaacacacaca-----aga-aaaa 297
           |||||||| |||| |||||||||||||||||||||||||||||||||     | | | | 
Sbjct: 251 cagtctgaaggcatggtgggtgaagcctgtgtaagaaaacacacacacacacacacacac 192

                                                                       
Query: 298 aaaatccgcaaaaaaacgcaaa------gtgtgtgtgtggggggggggtg-tgtttngtt 350
           ||||  | |||||||| |||||      |||||||||||||||||||| | ||||| |||
Sbjct: 191 aaaa--ctcaaaaaaaggcaaagtgtctgtgtgtgtgtgggggggggggggtgttt-gtt 135

                  
Query: 351 ctgtttt 357
            ||||||
Sbjct: 134 ttgtttt 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 752
Length adjustment: 9
Effective length of query: 349
Effective length of database: 743
Effective search space:   259307
Effective search space used:   259307
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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