Query= MSMg01no340_j06.b1 MSMg01no340_j06.b1 CHROMAT_FILE:
MSMg01no340_j06.b1 PHD_FILE: MSMg01no340_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:37 2005
(565 letters)
>mm_chr3_79139528_79140497
Length = 970
Score = 1038 bits (537), Expect = 0.0
Identities = 557/565 (98%), Gaps = 5/565 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtccggctagccttctgtaacctttgatgctctctaagacagcacgggaacat 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 675 gaattctgtccggctagtcttctgtaacctttgatgctctctaagacagcacgggagcat 616
Query: 65 gactcagcttcctctagagttccagaaaatgatgcatggcaaacctctgggtgcttcagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gactcagcttcctctagagttccagaaaatgatgcatggcaaacctctgggtgcttcagt 556
Query: 125 ggtgaatttgcaggtgttgaacttactgcaaactaaaattactcttcttgacatgcctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggtgaatttgcaggtgttgaacttactgcaaactaaaattactcttcttgacatgcctga 496
Query: 185 tttggggtgtatgtgtattcacatatggatggatttaggtatttggacatgatttctgta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttggggtgtatgtgtattcacatatggatggatttaggtatttggacatgatttctgta 436
Query: 245 ctacattagtatgcattgcctgg--tttttttctctctctctctct--tactttgaaaat 300
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 435 ctacattagtatgcattgcctgggttttttttctctctctctctctcttactttgaaaat 376
Query: 301 atagatcaaatgtaacaatttacttttatactatagaacttaaaactgaaagaaaaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atagatcaaatgtaacaatttacttttatactatagaacttaaaactgaaagaaaaaaaa 316
Query: 361 a-ctacctcatccatccaattaaaatgttaactatatagttgaaaggttaattttgaact 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aactacctcatccatccaattaaaatgttaactatatagttgaaaggttaattttgaact 256
Query: 420 tccttcctgatggaatgatttaggtctagggcaagacagattgttatagacctatataaa 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 255 tccttcctgatggaatgatttaggtctagggcaagacagatttttatagacctatataaa 196
Query: 480 ccaggctgtccttgaacttacaaagctccaccttcctctgcctctatcaagattttatgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ccaggctgtccttgaacttacaaagctccaccttcctctgcctctatcaagattttatgt 136
Query: 540 tttagtaacacaactacttggtggg 564
|||||||||||||||||||||||||
Sbjct: 135 tttagtaacacaactacttggtggg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 970
Length adjustment: 10
Effective length of query: 555
Effective length of database: 960
Effective search space: 532800
Effective search space used: 532800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_j06.g1 MSMg01no340_j06.g1 CHROMAT_FILE:
MSMg01no340_j06.g1 PHD_FILE: MSMg01no340_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:37 2005
(531 letters)
>mm_chr3_78937091_78938023
Length = 933
Score = 957 bits (495), Expect = 0.0
Identities = 523/533 (98%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 1 tctgaatgcaagtctaagaagtagggtaatacggaagactctggagaaacacacgtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaatgcaagtctaagaagtagggtaatacggaagactctggagaaacacacgtgtgg 260
Query: 61 gcaagctcagataattccaaagactttctaaagagctgaaaaattcttcagaataacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagctcagataattccaaagactttctaaagagctgaaaaattcttcagaataacaca 320
Query: 121 tcatactgaagagaaggtaatagctaccacagcacacatatgaaattgatttgaaaccaa 180
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatactgaagagaaggtaatggctgccacagcacacatatgaaattgatttgaaaccaa 380
Query: 181 tactaaagagaatcagtcctggagtagaggcaaaacaaccaagctggtacagtctctgtt 240
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 381 tactaaagagaatcagtcctggagtagaggcaaaacaaccatgctagtacagtctctgtt 440
Query: 241 atgaataataatccaaagacacacacagcacaggtacatatttttttccaggggttgaat 300
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 atgaataataatccagagacacacacagcacaggtacatattttttttcaggggttgaat 500
Query: 301 tctgggtcctgcacatcctataacaaaaacactaccactgagctgcaaccattatttctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgggtcctgcacatcctataacaaaaacactaccactgagctgcaaccattatttctg 560
Query: 361 agaattctttgaattatttcattattatgtagcaccatagaaactactgcacagtattta 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 agaattctttgaattatttcattattatgtagcaccatagaaattactgcacagtattta 620
Query: 421 aaccaatgtaagaggaaactatgttcaaccctatttcatcctgagcttctgttacttgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccaatgtaagaggaaactatgttcaaccctatttcatcctgagcttctgttacttgct 680
Query: 481 gtgctgggctgct--gttttttgaggcagtgtcttccactgttactctatctg 531
||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgttgggctgctctgttttttgaggcagtgtcttccactgttactctatctg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 933
Length adjustment: 10
Effective length of query: 521
Effective length of database: 923
Effective search space: 480883
Effective search space used: 480883
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
