Query= MSMg01no340_n09.b1 MSMg01no340_n09.b1 CHROMAT_FILE:
MSMg01no340_n09.b1 PHD_FILE: MSMg01no340_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:56 2005
(581 letters)
>mm_chr3_40695007_40695989
Length = 983
Score = 1021 bits (528), Expect = 0.0
Identities = 567/580 (97%), Gaps = 2/580 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctctcaagtacaaccatggtgttctaatattttgataaccacagctccagat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctctcaagtaaaaccatggtgttctaatattttgataaccacagctccagat 263
Query: 64 ggcagaatgtttaacaaatatatgacttaaaatccaagaaaaatacataatacactggca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcagaatgtttaacaaatatatgacttaaaatccaagaaaaatacataatacactggca 323
Query: 124 tgaactgaacacctgggtaaaacaatatgattcagtgagtgtttttgcacagagtctggg 183
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 324 tgaactgaacacctgggtaaaacaatatgattcagtgtgtgtttttgtacagagtctggg 383
Query: 184 gcagagcagcactgcactttcaaaattcgctctggtctcactacagaaaggcagaacagc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcagagcagcactgcactttcaaaattcgctctggtctcactacagaaaggcagaacagt 443
Query: 244 cagactcagaactggagagcaagaagggtgagcatctggagagagca-tactga-tataa 301
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 444 cagactcagaactggagagcaagaagggtgagcatctggagagagcagtactgaatataa 503
Query: 302 ctgcagacatatgacagaaacaaaaggtctgcactgtaagacaagcatactagtacctgc 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 ctgcagacatatgacagaaataaaaggtctgcactgtaagacaagcatactagcacctgc 563
Query: 362 ctgttactgttattgcactacgaaggagggaaagcaggaagaccctaagttcaaggccag 421
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctattactgttattgcactacgaaggagggaaagcaggaagaccctaagttcaaggccag 623
Query: 422 cctctaccagactgagctgtgagccagcctgggctccaaagtgagaacttacctaaaagg 481
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 624 cctctaccagactgagctgtgagccagcctgggctccaaagtgagaacttacttgaaagg 683
Query: 482 aaggaagaaaggaagggagtgagggaagagaggagggaggtaatgcagacatgtaaggac 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 aaggaagaaaggaagggagtgagggaagagaggagggaggtagtgcagacatgtaaggac 743
Query: 542 agagggtgcagtaatatttcttttattgacaaacactgaa 581
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 744 agagggtgcagtaatatttcttttattgacaaatactgaa 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 983
Length adjustment: 10
Effective length of query: 571
Effective length of database: 973
Effective search space: 555583
Effective search space used: 555583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_n09.g1 MSMg01no340_n09.g1 CHROMAT_FILE:
MSMg01no340_n09.g1 PHD_FILE: MSMg01no340_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:56 2005
(565 letters)
>mm_chr3_40758764_40759727
Length = 964
Score = 866 bits (448), Expect = 0.0
Identities = 469/478 (98%), Gaps = 6/478 (1%)
Strand = Plus / Minus
Query: 1 acttggttggaaagtaattgttaaaaaggtctttaaaaaattagtaaacagattaatcag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 actt-gttggaaagtaattgttaaaaaggtctttaaaaaattagtaaacagattaatcag 416
Query: 61 taacatgacgctttttgaagggaatatcacaagatcaaaaggtcatctgtgtggtatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 taacatgacgctttttgaagggaatatcacaagatcaaaaggtcatctgtgtggtatgtg 356
Query: 121 tgcacaagccccaagagttttatttttacaaattataaggatatataatatgtgctattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgcacaagccccaagagttttatttttacaaattataaggatatataatatgtgctattt 296
Query: 181 tacatctttatattacatacttattttataataaaatagaatttgcttttaagatgtatt 240
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 295 tacatctttatattatatacttattttataataaaatagaatttgcttctaagatgtatt 236
Query: 241 tcatgagggcactaacagcaaacttacgattcctg--aaaaaaaaaaaaaaaaaaaaagg 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 235 tcatgagggcactaacagcaaacttacgattcctgaaaaaaaaaaaaaaaaaaaaaaagg 176
Query: 299 gaggaagtaggttgataaaaagcaacatagccgccaggcatggtagcacttgcctttaat 358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 175 gaggaagtaggttgataaaaagcaacata---gccaggcatggtagcacttgcctttaat 119
Query: 359 cctagcactaggaaggcttgtgaggccagtctagtctacatagtgaattccaggccagcc 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cctagcactagaaaggcttgtgaggccagtctagtctacatagtgaattccaggccagcc 59
Query: 419 agggctacataatatagtgagatcctttctcaaaacagcatagggttcaaagaatgag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 agggctacataatatagtgagatcctttctcaaaacagcatagggttcaaagaatgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
