BAC Information

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BAC

Clone NameMSMg01-340O04
Chromosome3 (Build37)
Map Location 42,002,467 - 42,171,310
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340O04.T7 (MSMg01no340_o04.b1)MSMg01-340O04.TJ (MSMg01no340_o04.g1)
ACCAG454816AG454817
length722744
length of high quality
(start - end)		609 (49 - 657)619 (75 - 693)
definitionCHROMAT_FILE: MSMg01no340_o04.b1 PHD_FILE: MSMg01no340_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:59 2005CHROMAT_FILE: MSMg01no340_o04.g1 PHD_FILE: MSMg01no340_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,002,467 - 42,003,057)(42,170,916 - 42,171,310)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGCCCCTCTTGCCTTTCTCTGAGAAGGCAATCTTGGAGACT
AGAATCTTGCAGACACTTTGATGACTTTTATTTTTCTCAGCCTATCACAT
GTCACTTCGCACCTCTTCTCCTTAGGCTGCTGGCTTTGTCATCTGCAATA
CTATTACATGAGTAATATAAAGGGAAAGAACTGGGTGGGAGAGGGGTAGA
TTTGTGTCTTACCCGTTTCTCACTGAACACTGCACAGTGGTCCTATTCTC
TTTCTATGTGTGCAGGGCCAGCTTCACTTTCTATAGGGGTGAAGTAGAAA
GCCTCCCTGTAACTTTCCTTGAGGAGAGAATGGTAAATGGCACAGATTGG
GATTCACAGACATCCTAACTTCTCTGGGCGGATTTACTGTCCTCAAGCTG
CACTTAGAGAAGTTTCAAATCAAGGAACACAGACTCCCTCTCCTGGCTCT
TCAATGGGACATTGCCCCAGGAAGATAAACCTGTCACAGTTGGTTGTGTT
TCTTGTTCTCATTAGGGAATAAGCACCTTTAACAGGTGTTGGTGAATATA
GCTGCCTGGGTTTGACATTTGTCTCTTTCTCACAGGACATTCAGTTCAGC
AAGCCCGGNGTAAGAATTTGGTCTGGAATGTCTTTGAGGAGTTTAAAAAT
AGACATCTTTGGCATTTTTTTT

CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATTCATTGCTGATCAAAAATTGTA
CCACAGTGGAAAACTGTGCAGAGTTTATTCCAAATTAAACCAATATCTAT
TGTGTTTTCAACCCTTGCAAAAATCAGTATTTTTCTAAGAGGAAAGAAAG
CACTTTTTGGTGCCAAGTTATGACCTGTGCATTCAGAATAGTCCACTCCC
AACAGGCAAAAACAGAAAATTTCCTAGAGTTGAATGGATATACAAAAAAA
TAACACATATATTGAGCTGCCGAATCTAAATAGGAAGGATAGGTTCACAT
GACAAGCAGGTGAAATTCTAAATCATCCTATAAATGAAAAAAGACAGACA
GGAAGGATGCATTGCCTAGAATTTTACCCACATAAAATTCTAGAAAATGC
TAATTACTCAATGCTAACGAAAAGCAAGGAAATGGAACAGGGAATGGGAT
GAAAATCAGATTGCAGAAACCAAAGGGCAAACTGGTAACATTCTGTAACT
TAGCATCGAAGTCATTTTATTGATGATTATAAACCATGTTACACTTAAGG
CTTTTAGTGATTCATTCTAATGCAAGTAGTATGTGGCTCAACAAACTTTC
CTTTTAAAGAGTGGATACAATAGTATAGGCCATATACCATTCTTCTTTTA
GCTAGGAGATGCTTAGNTAGCCTGGCTTCCAGTGTGCAGCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_o04.b1 MSMg01no340_o04.b1 CHROMAT_FILE:
MSMg01no340_o04.b1 PHD_FILE: MSMg01no340_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:59 2005
         (609 letters)



>mm_chr3_42002249_42003257
          Length = 1009

 Score = 1073 bits (555), Expect = 0.0
 Identities = 582/591 (98%)
 Strand = Plus / Plus

                                                                       
Query: 19  cttgcctttctctgagaaggcaatcttggagactagaatcttgcagacactttgatgact 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cttgcctttctctgagaaggcaatcttggagactagaatcttgcagacactttgatgact 278

                                                                       
Query: 79  tttatttttctcagcctatcacatgtcacttcgcacctcttctccttaggctgctggctt 138
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttatttttctcagcccatcgcatgtcacttcgcacctcttctccttaggctgctggctt 338

                                                                       
Query: 139 tgtcatctgcaatactattacatgagtaatataaagggaaagaactgggtgggagagggg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtcatctgcaatactattacatgagtaatataaagggaaagaactgggtgggagagggg 398

                                                                       
Query: 199 tagatttgtgtcttacccgtttctcactgaacactgcacagtggtcctattctctttcta 258
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tagatttgtgttttacccgtttctcactgaacactgcacagtggtcctattctctttcta 458

                                                                       
Query: 259 tgtgtgcagggccagcttcactttctataggggtgaagtagaaagcctccctgtaacttt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgtgtgcagggccagcttcactttctataggggtgaagtagaaagcctccctgtaacttt 518

                                                                       
Query: 319 ccttgaggagagaatggtaaatggcacagattgggattcacagacatcctaacttctctg 378
           ||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 519 cctcgaggaaagaatggtaaatggcacagattaggattcacagacatcctaacttctctg 578

                                                                       
Query: 379 ggcggatttactgtcctcaagctgcacttagagaagtttcaaatcaaggaacacagactc 438
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggcagatttactgtcctcaagctgcacttagagaagtttcaaatcaaggaacacagactc 638

                                                                       
Query: 439 cctctcctggctcttcaatgggacattgccccaggaagataaacctgtcacagttggttg 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cctctcctggctcttcaatgggacattgccccaggaagataaacctgtcacagttggttg 698

                                                                       
Query: 499 tgtttcttgttctcattagggaataagcacctttaacaggtgttggtgaatatagctgcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgtttcttgttctcattagggaataagcacctttaacaggtgttggtgaatatagctgcc 758

                                                              
Query: 559 tgggtttgacatttgtctctttctcacaggacattcagttcagcaagcccg 609
           |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 759 tgggtttgacatttgtttctttctcacaggacattcagttcagcaaacccg 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_o04.g1 MSMg01no340_o04.g1 CHROMAT_FILE:
MSMg01no340_o04.g1 PHD_FILE: MSMg01no340_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:59 2005
         (619 letters)



>mm_chr3_42170292_42171310
          Length = 1019

 Score =  748 bits (387), Expect = 0.0
 Identities = 393/395 (99%)
 Strand = Plus / Minus

                                                                        
Query: 225  aataacacatatattgagctgccgaatctaaataggaaggataggttcacatgacaagca 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 aataacacatatattgagctgccgaatctaaataggaaggataggttcacatgacaagca 960

                                                                        
Query: 285  ggtgaaattctaaatcatcctataaatgaaaaaagacagacaggaaggatgcattgccta 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  ggtgaaattctaaatcatcctataaatgaaaaaagacagacaggaaggatgcattgccta 900

                                                                        
Query: 345  gaattttacccacataaaattctagaaaatgctaattactcaatgctaacgaaaagcaag 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  gaattttacccacataaaattctagaaaatgctaattactcaatgctaacgaaaagcaag 840

                                                                        
Query: 405  gaaatggaacagggaatgggatgaaaatcagattgcagaaaccaaagggcaaactggtaa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  gaaatggaacagggaatgggatgaaaatcagattgcagaaaccaaagggcaaactggtaa 780

                                                                        
Query: 465  cattctgtaacttagcatcgaagtcattttattgatgattataaaccatgttacacttaa 524
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 779  cattctgtaacttagcatagaagtcattttattaatgattataaaccatgttacacttaa 720

                                                                        
Query: 525  ggcttttagtgattcattctaatgcaagtagtatgtggctcaacaaactttccttttaaa 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  ggcttttagtgattcattctaatgcaagtagtatgtggctcaacaaactttccttttaaa 660

                                               
Query: 585  gagtggatacaatagtataggccatataccattct 619
            |||||||||||||||||||||||||||||||||||
Sbjct: 659  gagtggatacaatagtataggccatataccattct 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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