Query= MSMg01no340_p06.b1 MSMg01no340_p06.b1 CHROMAT_FILE:
MSMg01no340_p06.b1 PHD_FILE: MSMg01no340_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:04 2005
(623 letters)
>mm_chr3_90285382_90286404
Length = 1023
Score = 1091 bits (564), Expect = 0.0
Identities = 612/642 (95%), Gaps = 26/642 (4%)
Strand = Plus / Minus
Query: 5 gaattctcgggtatacacatc-ttttttctttctcttttttggttttcttttgttttcgt 63
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 957 gaattctcgggtatacacatctttttttctttctcttttttggttttcttttgttttcgt 898
Query: 64 tttttgagacagggtttccctgtgtaaaggtaacctcgatctcagatatctggctgcctc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tttttgagacagggtttccctgtgtaaaggtaacctcgatctcagatatctggctgcctc 838
Query: 124 tgcctcccacgtgctgggactaaaggtgtatgtcactattaccttacacatgtacaccaa 183
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 837 tgccttccacgtgctgggactaaaggtgtacgtcactattaccttacacatgtacaccaa 778
Query: 184 caacaacaacaacaaccaaacagactgg---------------------taacaacactc 222
||||||||||| || |||||||||||| |||||||||||
Sbjct: 777 caacaacaaca--aa-caaacagactggtatgatggtgtacacctttaataacaacactc 721
Query: 223 agaacatagagacaagcagatctctgcaagctggaagacaactagggctacatagtgaga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agaacatagagacaagcagatctctgcaagctggaagacaactagggctacatagtgaga 661
Query: 283 ccttgtttcaaaacaaacaaacaataagtaaataatatatttgctattttccttccacac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 660 ccttgtttcaaaacaaacaaacaataagtaaataatatatttgctattttccttccatac 601
Query: 343 attcacacacaaataatgacgaaataaacaaatgaatctgggcttcaattattactagcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 attcacacacaaataatgacgaaataaacaaatgaatctgggcttcaattattactagcc 541
Query: 403 ttaaatctaatctcaatgcttaggaaagtgggct-gggtggctggagaaatgcctcaggt 461
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 540 ttaaatctaatctcaatgcttaggaaagtgggctggggtggctggagaaatgcctcaggt 481
Query: 462 taagagtgcttgttcctcttgtagaggacctgggttcagttcccaacatccatttaatgg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 480 taagagtgcttgttcctcttgtagaggacctgggttcagttcccaacatccatttgatgg 421
Query: 522 ttcataatcatctgtaactccagttccaggaaatccaaagccctcttctaacctccataa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttcataatcatctgtaactccagttccaggaaatccaaagccctcttctaacctccataa 361
Query: 582 gcccaaggccatgcacatggtatgcatacatatacatataca 623
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcccaaggccatgcacatggtatgcatacatatacatataca 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_p06.g1 MSMg01no340_p06.g1 CHROMAT_FILE:
MSMg01no340_p06.g1 PHD_FILE: MSMg01no340_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:04 2005
(557 letters)
>mm_chr3_90139047_90140003
Length = 957
Score = 1017 bits (526), Expect = 0.0
Identities = 552/566 (97%), Gaps = 9/566 (1%)
Strand = Plus / Plus
Query: 1 agactggcctcaaattcagagagatccacctgtatcttcaagct---------ctatgtt 51
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 192 agactggcctcaaattcagagagatccacctgtatcttcaagctggtatatctctatgtt 251
Query: 52 agcattttttatttttattgattgatttgagtcatgggcttctttaggtaatgctggttt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agcattttttatttttattgattgatttgagtcatgggcttctttaggtaatgctggttt 311
Query: 112 tgaactttgtaatcagagctggtattgagttccttatcctcttacctttacctctaagag 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgaactttgtaatcagagctggtattgagttccttatcctcttacctttacctctaagag 371
Query: 172 tttgagattacacacaggggctactaaacctcagtggttaagagtacacatgctgggtat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttgagattacacacaggggctactaaacctcagtggttaagagtacacatgctgggtat 431
Query: 232 atggagttcagaagttgatgtagatgtcttcttttatagttctctgccttattattgtta 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atggagttcagaagttgatgtagatgtcttcttttatagttctctgccttattattgtta 491
Query: 292 tttaaattttctctctgtgtgtgttagtgtctgcatggatgtcgaccatgtatatgcagt 351
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 tttaaattttctctctgtgtgtgttagtgtctgcatggatgtctaccatgtatatgcagt 551
Query: 352 gcttgaggaggccagaagatggcattggataccttgggactggagttagagatagatgtg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcttgaggaggccagaagatggcattggataccttgggactggagttagagatagatgtg 611
Query: 412 atctccatggtcctctggaagagtgttaagtgctaagcttcctctttacccttcctaccc 471
||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct: 612 atctccatggtcctctggaagagtgttaactgctgagcttcctctttacccttcccaccc 671
Query: 472 ctttttagtagtcatgggtagacatgatctgtgaatgtgggtactcctgccatggtggga 531
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 672 ctttttagtagtcatgggtagacatgatatgtgaatgtgggtactcctgccatggtggga 731
Query: 532 atataaatgggaatgcaaaactttca 557
||||||||||||||||||||||||||
Sbjct: 732 atataaatgggaatgcaaaactttca 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
