Query= MSMg01no341_e19.b1 MSMg01no341_e19.b1 CHROMAT_FILE:
MSMg01no341_e19.b1 PHD_FILE: MSMg01no341_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:30 2005
(484 letters)
>mm_chr3_25666741_25667624
Length = 884
Score = 920 bits (476), Expect = 0.0
Identities = 479/480 (99%)
Strand = Plus / Plus
Query: 5 gaattctccactttgatttctaaagatcagatctctcacagcaatctgatttcactattc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccactttgatttctaaagatcagatctctcacagcaatctgatttcactattc 264
Query: 65 tcctaagtgtctcatagcaagcaccaggggttcacctgtgttgactcccctactttggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctaagtgtctcatagcaagcaccaggggttcacctgtgttgactcccctactttggga 324
Query: 125 ttgtaagtgttttttattgtgcctggcttttcactgagtctagggattgaactcagtgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtaagtgttttttattgtgcctggcttttcactgagtctagggattgaactcagtgtg 384
Query: 185 gtacacactgtatagaccaagccttgtccctagaactagctgtatattcatgtcaaaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtacacactgtatagaccaagccttgtccctagaactagctgtatattcatgtcaaaaaa 444
Query: 245 catgtaatttttgtaaagaagacaaaagaatgttggataaaatttgtaaagaaacaagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgtaatttttgtaaagaagacaaaagaatgttggataaaatttgtaaagaaacaagtg 504
Query: 305 ttgatgtatttaggaatggttccatttgttcaggagaacctagaattcattcaaactctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgatgtatttaggaatggttccatttgttcaggagaacctagaattcattcaaactctg 564
Query: 365 ttctactaactattgatcaaagcacttgttgacattaaagagaaataataactctgaatt 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 ttctactaactattgatcaaagcacttgttgaaattaaagagaaataataactctgaatt 624
Query: 425 tagcctatttttcctgatatactaaagggtgttatctctatctaaagagatcacgtgtct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagcctatttttcctgatatactaaagggtgttatctctatctaaagagatcacgtgtct 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_e19.g1 MSMg01no341_e19.g1 CHROMAT_FILE:
MSMg01no341_e19.g1 PHD_FILE: MSMg01no341_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:31 2005
(458 letters)
>mm_chr3_25808409_25809264
Length = 856
Score = 781 bits (404), Expect = 0.0
Identities = 444/458 (96%), Gaps = 2/458 (0%)
Strand = Plus / Minus
Query: 1 caaaagaaggttggtcaagttggctttgggatagatgctgaatattaggtataaaataaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caaaagaatgttggtcaagttggctttgggatagatgctgaatattaggtataaaataaa 597
Query: 61 attttgtctcctatcagagaagattctgcactgtcttttgattctggtgttttgttgtga 120
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 596 attttgtctcctatcagggaagattctgcactg--ttttgattctggtgttttgttgtga 539
Query: 121 ggatcaatttgggaagtcagtgagtaattggctaattacagtcttgttgctctagggtga 180
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 538 ggatcaatttgggaagtcagtgagtaattagctaattacagtctcgttgctctggggtga 479
Query: 181 ttggcaggacaaccagtttgtttggaaaaggtgaaataattgcttctttgactttgccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttggcaggacaaccagtttgtttggaaaaggtgaaataattgcttctttgactttgccat 419
Query: 241 acttgatttgttttagagttttagtgattggtactgaagtaaaaacattttagcaataaa 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 418 acttgatttgttttagagttttagtgattggtactgaagtaaaaatattttagcaataaa 359
Query: 301 atttataccactatctgttgaccaaggttatagatttaaagcatgttgtgtgggaaatat 360
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 358 atttataccactatctgctgaccaagattatagatttaaagcatgttgtgtgggaaatat 299
Query: 361 tttgttcaatacagttaggaatggcatggagaaatttgtcagtacatccaggaggttggc 420
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 298 tttgttcaatacagttaggaatggcatggagaaatttgtcagtatattcaggaggtcggc 239
Query: 421 gtaacattctgaactgagaccttcacttggtatccttt 458
|||||||||||||||||||||||||||||||||||||
Sbjct: 238 ataacattctgaactgagaccttcacttggtatccttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 856
Length adjustment: 10
Effective length of query: 448
Effective length of database: 846
Effective search space: 379008
Effective search space used: 379008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
