BAC Information

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BAC

Clone NameMSMg01-341F03
Chromosome3 (Build37)
Map Location 128,095,840 - 128,248,207
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341F03.T7 (MSMg01no341_f03.b1)MSMg01-341F03.TJ (MSMg01no341_f03.g1)
ACCAG455145AG455146
length719744
length of high quality
(start - end)
471 (52 - 522)365 (81 - 445)
definitionCHROMAT_FILE: MSMg01no341_f03.b1 PHD_FILE: MSMg01no341_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:32 2005CHROMAT_FILE: MSMg01no341_f03.g1 PHD_FILE: MSMg01no341_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,095,840 - 128,096,306)(128,247,843 - 128,248,207)
sequence
CCCACGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTACTCAGTCTATTGGTCCAGGTTTTATTTGAATAACT
TAATTTTTCTGTTTGATTATGTACTTACTTCTCTTTATATTCTATATAGT
AATCTCTGATTTGTTCCCATTCTGTAGGCTCTCTGTACTCTGTTGTTTAG
GGAGATGCAACATACATGTCTATTCACCTCAGATAGGGGACTCACAACAA
TATGGATACCATTTGAACCAAACATGGCAAACCAATGAGTTTGATTGGGG
TTATATACAATAGTATATGGAAATAGTTACTTGCAGGATTAAAAGTGACT
CAAAGACAGCTCATAATTCTCGGAACAGGGAGCATACTGAACAGCCTGTA
GTTCAACAGGTTGGAGAGTGACCTTTCCAGGTGCCTCAGTTGGTTTAAAC
TTCCAAGCAACTCATCTGGTTTCTGCTTCTTTCTGCAGCTGATCTTGTCT
CACTCTTCTTTGCCTATCAACCCAGCTTGTCTAAGAATAACTCTCAGCTT
TTCTTGCTTATTCTAGCAGAGAGGGAGCTAGTGAAATAGTTTCAGGGACT
TCCGAAAACTATTTTGAGTTGGTTGGTCTCCTGCTTGCGGAGGCTCCCAA
AAGAATTCCTTATTTCCCCCTTGTATCCTGGTTGAAAATTCCCTTTTCCC
TCTCGGGTTTTTACAAAAG
NNNCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTCTTTCTAGAGGCAA
ATGAAGGCTAAGTAATCTGTGGTCCAGGAAAAGAAATCTTTCCCAGACTC
CATTGGGAAATGTTTCAGGACAAGGGTGTCTGAAGGAGATAAAGATAGAT
TTAAGACAGAGAAACACCCATGTCCAGAAACACACACCTAAGGGATCTTG
GAGCTTGGCGTGCTTACGGATCGATAAAAACAAATTCAGAGTGGTGGGAA
GCAGGGCACACAAAATGGCAGAAGGAAATGATTGCAGTGTCTATATCCTA
AAAGAACATTCAGGAATGTATTCAGGTGATTAGGTGAATCTTAATATACA
GGATATCATTATATTTAGGGCTTTAAGCTTGAGAATCAATATTAGAATTG
CAGTGTTACCAAAGTATGAATTCAACTTGAGTGTAGAAGAGTGGAGAGTT
AGTAATGTATTTATAAACAAATGAGGGGAGAGCTGGATTCCTGGAGAAAT
AATTGTGGGTGTTGCTATATATGGGAGGAAAGGGGAAGAACCTCACAAAA
AATGACTTGTTTTGGCATCCTAAAAAATTTCCTTTTTCATAAAAAAAAAA
ACTGGGTGGTGGGGGGCACCCCTTTATTTCCACCCTCTGGAGTATAGGCA
GGGGCTTTTTTGTATTCCCCCCTTATGNNTCCAATACTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_f03.b1 MSMg01no341_f03.b1 CHROMAT_FILE:
MSMg01no341_f03.b1 PHD_FILE: MSMg01no341_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:32 2005
         (471 letters)



>mm_chr3_128095636_128096506
          Length = 871

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctactcagtctattggtccaggttttatttgaataacttaatttttctgtttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctactcagtctattggtccaggttttatttgaataacttaatttttctgtttg 264

                                                                       
Query: 65  attatgtacttacttctctttatattctatatagtaatctctgatttgttcccattctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attatgtacttacttctctttatattctatatagtaatctctgatttgttcccattctgt 324

                                                                       
Query: 125 aggctctctgtactctgttgtttagggagatgcaacatacatgtctattcacctcagata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggctctctgtactctgttgtttagggagatgcaacatacatgtctattcacctcagata 384

                                                                       
Query: 185 ggggactcacaacaatatggataccatttgaaccaaacatggcaaaccaatgagtttgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggactcacaacaatatggataccatttgaaccaaacatggcaaaccaatgagtttgat 444

                                                                       
Query: 245 tggggttatatacaatagtatatggaaatagttacttgcaggattaaaagtgactcaaag 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 tggggttatatacaatagtatatggaaagagttacttgcaggattaaaagtgactcaaag 504

                                                                       
Query: 305 acagctcataattctcggaacagggagcatactgaacagcctgtagttcaacaggttgga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagctcataattctcggaacagggagcatactgaacagcctgtagttcaacaggttgga 564

                                                                       
Query: 365 gagtgacctttccaggtgcctcagttggtttaaacttccaagcaactcatctggtttctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagtgacctttccaggtgcctcagttggtttaaacttccaagcaactcatctggtttctg 624

                                                          
Query: 425 cttctttctgcagctgatcttgtctcactcttctttgcctatcaacc 471
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttctttctgcagctgatcttgtctcactcttctttgcctatcaacc 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no341_f03.g1 MSMg01no341_f03.g1 CHROMAT_FILE:
MSMg01no341_f03.g1 PHD_FILE: MSMg01no341_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:32 2005
         (365 letters)



>mm_chr3_128247643_128248407
          Length = 765

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcttctttctagaggcaaatgaaggctaagtaatctgtggtccaggaaaagaaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcttctttctagaggcaaatgaaggctaagtaatctgtggtccaggaaaagaaatctt 506

                                                                       
Query: 61  tcccagactccattgggaaatgtttcaggacaagggtgtctgaaggagataaagatagat 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcccagattccattgggaaatgtttcaggacaagggtgtctgaaggagataaagatagat 446

                                                                       
Query: 121 ttaagacagagaaacacccatgtccagaaacacacacctaagggatcttggagcttggcg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 ttaagacagagaaacacccatgtccagaaacacacacctaagggatcttggagcttggtg 386

                                                                       
Query: 181 tgcttacggatcgataaaaacaaattcagagtggtgggaagcagggcacacaaaatggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcttacggatcgataaaaacaaattcagagtggtgggaagcagggcacacaaaatggca 326

                                                                       
Query: 241 gaaggaaatgattgcagtgtctatatcctaaaagaacattcaggaatgtattcaggtgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaggaaatgattgcagtgtctatatcctaaaagaacattcaggaatgtattcaggtgat 266

                                                                       
Query: 301 taggtgaatcttaatatacaggatatcattatatttagggctttaagcttgagaatcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 taggtgaatcttaatatacaggatatcattatatttagggctttaagcttgaggatcaat 206

                
Query: 361 attag 365
           |||||
Sbjct: 205 attag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)