BAC Information

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BAC

Clone NameMSMg01-341I04
Chromosome3 (Build37)
Map Location 34,354,437 - 34,354,819
singlet/doubletsinglet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341I04.T7 (MSMg01no341_i04.b1)MSMg01-341I04.TJ (MSMg01no341_i04.g1)
ACCAG455289AG455290
length745829
length of high quality
(start - end)
387 (51 - 437)160 (77 - 236)
definitionCHROMAT_FILE: MSMg01no341_i04.b1 PHD_FILE: MSMg01no341_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:47 2005CHROMAT_FILE: MSMg01no341_i04.g1 PHD_FILE: MSMg01no341_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGAGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTCAGTGCGTCTCATAAGGAAAAGGGGTCTGTCCCAAAG
GAAGTACATGATGGAATTAAACAGCAAGGCAGCACAGCCAGGAGAGAGAA
AGCACGGGCCAGCATCGTGCTCTCTTTCTTGTTATTAAGCTCTGACCAAG
TAGTGTTATCTATCTCAGCTTCTCACACACAGACCTGGCCGTAGGTGGAA
CAAGGTTACATTTCAGAACCCAGAAGCCAGAATATGGTACCCATAAGAGT
GAATTATGGGGAACTATGTTGGAGACGTAGCTATAGAGTCTAAAAGGAAA
ATAAAACCTACCTTATTTATGTCTCCCAAGAAATTCAAGATCTTACAACT
GGGCATAGATGCTCTCAGTCCATGAGAAGGGATAAGTTTTTAATGTGAAA
CACTGGTCTTGCATGTCTGCCATAGACCATTCACTTCCTTTTCCTGCTGT
TGTCTCTACTGCTCGGTTGGTGTCTCTCTTTCTTTCGTGCCCCCCCGTTT
CACCTCTCGCCCGGCTTGGTTTCAGCTACCACGGTCCGTCCTTCGTCCCC
CTCAATTTCGCCTCTCTCTTACCACCCTTTTCTGCATCTCTCCCTATCTA
CTTTTTTGAGGCCCTTCATTTCTCCCTTTTGCGCTTGTCCCCCCTTTTTC
CCCGCTCCTTATGATTTCCCTGCCATTTTCCCCCCTTTCCCCCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGAATTCAGTGCATGAATGTA
ACTTGTCTATCGTGGCAGTGCAGGTCAGTAATCACAGTGCTTGGAGGCAT
AAACAGATCTTCCCTATGGACCAGCCAGTCTAGTCAACAGTGATCTCTGG
GTTCATAGAGGGACCCTGTCTCAAAATTTACANNACAGNAAAAAGTGTAC
TGGAAGAAGACATCTCAGTGCTCACCTTCTGGCTTAAGACAANNNNNNGG
GGNNNCNCTTTTTTTTTTTCTTCCCGCTGTACTTTTTCCCCTGTTTTTCC
TCTCCCTTTCCCTACCATCTTTTTTTCCTCCACCCCGTTCTTGTCTTACT
TCTTTTCCTATTCCCTCTTATTTTTCCCCCTTTCCGCCCCTTTATTCGCC
CGCCCCTTTTTCTTTTTCTCCCTCCTTTCTCCATCCTCCCCATCATCTCT
CCTCTTATTTTCGATTTCCCCCCTCTTTTCCCTTCTCCCCCTCTCCCTAC
TTCCTTACTCTTTCGCTCTATCCCCCTTCCCCTCCCTCCCATTTGTACCT
TTACTTTTTCTTTCTTCACTTACCCCCGCTTCCTCTTCCTCCCCCTTTTT
CTTCCCATCCTTTTTTTCCACTTCCGCTTACTCTTCTCCCTATTTTTCCT
ATTATTTTTCCCCCCCCCTTTCCATCTACCGCTCTCTTACCTTCACCTTT
TTCCACCCACACTTTCTATCTCCTTCTTTCTTACCCTCTCCTTCTTCTTC
CTTTTTTTTCTCCCCCCTTTTTTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_i04.b1 MSMg01no341_i04.b1 CHROMAT_FILE:
MSMg01no341_i04.b1 PHD_FILE: MSMg01no341_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:47 2005
         (387 letters)



>mm_chr3_34354233_34355019
          Length = 787

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcagtgcgtctcataaggaaaaggggtctgtcccaaaggaagtacatgatgg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gaattctttcagtgagtctcataaggaaaaggggtctgtcccaaaggaagtacatgatgg 528

                                                                       
Query: 65  aattaaacagcaaggcagcacagccaggagagagaaagcacgggccagcatcgtgctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aattaaacagcaaggcagcacagccaggagagagaaagcacgggccagcatcgtgctctc 468

                                                                       
Query: 125 tttcttgttattaagctctgaccaagtagtgttatctatctcagcttctcacacacagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tttcttgttattaagctctgaccaagtagtgttatctatctcagcttctcacacacagac 408

                                                                       
Query: 185 ctggccgtaggtggaacaaggttacatttcagaacccagaagccagaatatggtacccat 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 407 ctggccgtaggtggaacaaggttacatttcagaacctagaagccagaatatggtacccat 348

                                                                       
Query: 245 aagagtgaattatggggaactatgttggagacgtagctatagagtctaaaaggaaaataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aagagtgaattatggggaactatgttggagacgtagctatagagtctaaaaggaaaataa 288

                                                                       
Query: 305 aacctaccttatttatgtctcccaagaaattcaagatcttacaactgggcatagatgctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aacctaccttatttatgtctcccaagaaattcaagatcttacaactgggcatagatgctc 228

                                  
Query: 365 tcagtccatgagaagggataagt 387
           |||||||||||||||||||||||
Sbjct: 227 tcagtccatgagaagggataagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)