Query= MSMg01no341_j20.b1 MSMg01no341_j20.b1 CHROMAT_FILE:
MSMg01no341_j20.b1 PHD_FILE: MSMg01no341_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:55 2005
(467 letters)
>mm_chr3_127982856_127983723
Length = 868
Score = 777 bits (402), Expect = 0.0
Identities = 445/464 (95%), Gaps = 10/464 (2%)
Strand = Plus / Plus
Query: 5 gaattccattgcccagggcacaaaagcagaaactaaaa-tatgctggtgatggaaagcag 63
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattccattgcgcagggcacaaaagcagaaactaaaaatatgctggtgatggaaagcag 264
Query: 64 atgatgagagcaggatgaaggcacagaagtggactataataaaacacaaagcgagcggga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatgagagcaggatgaaggcacagaagtggactataataaaacacaaagcgagcggga 324
Query: 124 catgggaactggcagtgcagatgcggaggggcgctggctgactgtaatgaggtctgtggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgggaactggcagtgcagatgcggaggggcgctggctgactgtaatgaggtctgtggg 384
Query: 184 gctggtcgttcatactgtgaaattgcgacatgagtttgacttatgttccacgagttactt 243
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctagtcgttcgtactgtgaaattgcgacatgagtttgacttatgttccacgagttactt 444
Query: 244 acgcatttttgctgtgtaagtgaaaatcactggcacatgtatgcataggcttataactca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acgcatttttgctgtgtaagtgaaaatcactggcacatgtatgcataggcttataactca 504
Query: 304 tcttttattattttatatattttttcaaatagccctttattatttttataaaaaaaacta 363
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 505 tcttttattattttatatattttttcaaatagccctttattattttg-taggaaaaacta 563
Query: 364 acggagtaacttgaaataaatataattctgtctgtctgtctgtttgtctgtcttaacaca 423
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 acggagtaacttgaaataaatataattctgtctgtctgtctgt--------cttaacaca 615
Query: 424 ccttgcctcaagtttatttgtacaaacagtgtacattgataatc 467
|||||||||||||||||||||||||||||||||| || |||||
Sbjct: 616 gcttgcctcaagtttatttgtacaaacagtgtacaatggtaatc 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_j20.g1 MSMg01no341_j20.g1 CHROMAT_FILE:
MSMg01no341_j20.g1 PHD_FILE: MSMg01no341_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:55 2005
(403 letters)
>mm_chr3_128056668_128057471
Length = 804
Score = 750 bits (388), Expect = 0.0
Identities = 400/404 (99%), Gaps = 1/404 (0%)
Strand = Plus / Minus
Query: 1 aagatggtggtacctgggatatttatacccttgaaaatggattacaacatgactgacaac 60
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 604 aagatggtggtacctgggatatttatatccttgaaaatggattacaacataactgacaac 545
Query: 61 acattatacctgctacaatacaatatca-ttatcaatcatcttttccctcaattaggatg 119
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 544 acattatacctgctacaatacaatatcacttatcaatcatcttttccctcaattaggatg 485
Query: 120 accgttctagtgacaatcgcacaaagacacagagcaagtggatatttcaggttaggtaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 accgttctagtgacaatcgcacaaagacacagagcaagtggatatttcaggttaggtaag 425
Query: 180 ttcttgtaaagttcactgattccaagatgccaaagtagataccaagtaaatctctatgat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttcttgtaaagttcactgattccaagatgccaaagtagataccaagtaaatctctatgat 365
Query: 240 attttgataggtctcaagtacactgcaaatgcttatggcaccaaatgacaatacattcag 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 attttaataggtctcaagtacactgcaaatgcttatggcaccaaatgacaatacattcag 305
Query: 300 atgacagtgcatgaaactttgtgaagctaatgatgcagtgcaaaaataaactctttttac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgacagtgcatgaaactttgtgaagctaatgatgcagtgcaaaaataaactctttttac 245
Query: 360 tatagtatttgaattcaaaatggggaatgtgttttcattagtct 403
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tatagtatttgaattcaaaatggggaatgtgttttcattagtct 201
Score = 93.5 bits (48), Expect = 2e-23
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 145 gacacagagcaagtggatatttcaggttaggtaagttcttgtaaagtt 192
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gacacagagcaagtggatatttcaggttaggtaagttcttgtaaagtt 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 804
Length adjustment: 9
Effective length of query: 394
Effective length of database: 795
Effective search space: 313230
Effective search space used: 313230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
