Query= MSMg01no341_m23.b1 MSMg01no341_m23.b1 CHROMAT_FILE:
MSMg01no341_m23.b1 PHD_FILE: MSMg01no341_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:09 2005
(528 letters)
>mm_chr3_125239429_125240355
Length = 927
Score = 949 bits (491), Expect = 0.0
Identities = 509/515 (98%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 14 gaattcaaggatagcctgcaaaactatggcgtttgagtccaccatagtgcacatataaag 73
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 214 gaattcaaggatagcctgcaaaactatggcgtttgagtgcaccatagtgcacatataaag 273
Query: 74 actcagtcttaaaacaaaacaaacaaataaaataaagtaaaacatgtatttattatcata 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actcagtcttaaaacaaaacaaacaaataaaataaagtaaaacatgtatttattatcata 333
Query: 134 ctgcctatcataagtattctatgtaatatatgtgacacattgatgctaaaggttattttt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgcctatcataagtattctatgtaatatatgtgacacattgatgctaaaggttattttt 393
Query: 194 tattcaaactactggtaacatgtcaatcatttgctgcatgtctgcatatgactacataca 253
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tattcaaaccactggtaacatgtcaatcatttgctgcatgtctgcatatgactacataca 453
Query: 254 gctgtgtattctctgtgattttggagaatgctggcaagaaatggaagacatttgtctctt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gctgtgtattctctgtgattttggagaatgctggcaagaaatggaagacatttgtctctt 513
Query: 314 ttttcatctagaataaagtagcagaaaaaaagagagtttgaaattaaaatttcaaatacc 373
||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct: 514 ttttcatttagaataaagtaccaggaaaaa-gagagtttgaaattaaaatttcaaatacc 572
Query: 374 tatcatctacagaattcctctgtggttctaggcatatttagtggcacttttataggaaaa 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tatcatctacagaattcctctgtggttctaggcatatttagtggcacttttataggaaaa 632
Query: 434 acacaactgtcaaattattccaggagtgtctgagttttatcatcatagctcaagactctt 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 acacaactgtcaaattattccaggagtgtctgagttttatcatcatagctcaagactctt 692
Query: 494 caagtctgtcacagagttctaaagctagtgatgtg 528
|||||||||||||||||||||||||||||||||||
Sbjct: 693 caagtctgtcacagagttctaaagctagtgatgtg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space: 475006
Effective search space used: 475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_m23.g1 MSMg01no341_m23.g1 CHROMAT_FILE:
MSMg01no341_m23.g1 PHD_FILE: MSMg01no341_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:09 2005
(375 letters)
>mm_chr3_125387418_125388192
Length = 775
Score = 588 bits (304), Expect = e-172
Identities = 322/328 (98%)
Strand = Plus / Minus
Query: 48 gttggtttgtttctatttattcttttaaaaaataataatagtgggccagtgaggtggctc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gttggtttgtttctatttattcttttaaaaaataataatagtgggccagtgaggtggctc 716
Query: 108 agtgactagaggtgctgcctggggcaaatgagaaaggtaaattcaatcctctgaacccat 167
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agtgactagagctgctgcctggggcaaatgagaaaggtaaattcaatcctctgaacccat 656
Query: 168 gaaaaaggcagaggaggagaacccagcattatcctcagacctccacacttgcacaggagg 227
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaaaaaggtggaggaggagaacccagcattatcctcagacctccacacttgcacaggagg 596
Query: 228 atgcacacaccaacattcacttccacactcacgcgcttattcacaaaagtgaagcaataa 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 595 atgcacacaccaacattcacttccacactcacgcgcttattcacaaaagtgaagcaatta 536
Query: 288 ctgatttgtaaaaggtaaatagcaaacttaatgatacccagacagcattaaaacttcttg 347
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 535 ctgatttgtaaaaggtaaatagcatacttaatgatacccagacagcattaaaacttcttg 476
Query: 348 ttattgttcaaagtccaaactatctgat 375
|||||||||||||| |||||||||||||
Sbjct: 475 ttattgttcaaagttcaaactatctgat 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
