Query= MSMg01no342_b14.b1 MSMg01no342_b14.b1 CHROMAT_FILE:
MSMg01no342_b14.b1 PHD_FILE: MSMg01no342_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:31 2005
(448 letters)
>mm_chr3_128607997_128608844
Length = 848
Score = 607 bits (314), Expect = e-178
Identities = 437/548 (79%), Gaps = 106/548 (19%)
Strand = Plus / Plus
Query: 7 gaattccttgagtgccacccagatgagaagcacctttgcaggatgcccaaatgggtaagg 66
|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 101 gaattccttgagaggcacccagatgagaaacacctttgcaggatgcccaaatgggtaagg 160
Query: 67 agcagatcatgacttgcaaaaaataaatgaatcagatgtccattctggggtgtgtgtgtg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agcagatcatgacttgcaaaaaataaatgaatcagatgtccattctggggtgtgtgtgtg 220
Query: 127 tgtgtgt----------------------------------------------------- 133
|||||||
Sbjct: 221 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaatcacaacagtggacataataaaatggt 280
Query: 134 -----------------------------------------------------ccttttg 140
|||||||
Sbjct: 281 agccatttcatacctttccagtatggtaatcaactcttctccatggaagttgtccttttg 340
Query: 141 gtctactttgtggtgaagacagtttcactagttggacatacaatatttgcctcacgggag 200
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 341 gtctactttgtggtgaagacagtttcactagttggacatacaacatttgcctcacgggag 400
Query: 201 ctctgagctgtgcttggaggcatttgcacacgtgtatttaatatctttacaaattttatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctctgagctgtgcttggaggcatttgcacacgtgtatttaatatctttacaaattttatg 460
Query: 261 taaaattaccattcgttataaagaaatgccactaccgaccacaacaaagcacaaaaccaa 320
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 taaaattaccattcgttagaaagaaatgccactaccgaccacaacaaagcacaaaaccaa 520
Query: 321 tgactggcctacagaaagaactcctactaagcttaataaagtagaattttctgataagat 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgactggcctacagaaagaactcctactaagcttaataaagtagaattttctgataagat 580
Query: 381 acaacttgccaaacgcatgaaattcaagaagaacgaagaccaaagtgtggacactttacc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acaacttgccaaacgcatgaaattcaagaagaacgaagaccaaagtgtggacactttacc 640
Query: 441 ctttctta 448
||||||||
Sbjct: 641 ctttctta 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_b14.g1 MSMg01no342_b14.g1 CHROMAT_FILE:
MSMg01no342_b14.g1 PHD_FILE: MSMg01no342_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:31 2005
(474 letters)
>mm_chr3_128775401_128776274
Length = 874
Score = 859 bits (444), Expect = 0.0
Identities = 471/490 (96%), Gaps = 16/490 (3%)
Strand = Plus / Minus
Query: 1 attctttctggatccgatttgtgatcagtcgcattgacaggatctcactcattaatggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 attctttctggatccgatttgtgatcagtcgcattgacaggatctcactcattaatggat 559
Query: 61 taacaaatgactttacttcaacgactaggtaccataagtaagctaaaaccttggctatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taacaaatgactttacttcaacgactaggtaccataagtaagctaaaaccttggctatct 499
Query: 121 acaacagttagttgagtcccagattctgtttaaactagggtcagtgtgctctgtatctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acaacagttagttgagtcccagattctgtttaaactagggtcagtgtgctctgtatctgc 439
Query: 181 acttctaacttaaaaacctctttttagtttctttgtttttatgacacatcttcatgagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acttctaacttaaaaacctctttttagtttctttgtttttatgacacatcttcatgagtc 379
Query: 241 atgagtcagtaggtcggaaggattatcataggtgggtgactgactagacaatgcttggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgagtcagtaggtcggaaggattatcataggtgggtgactgactagacaatgcttggtc 319
Query: 301 ataaataatgtagtttgtctttatgccatttttacttctaccttggaaggtaacttccgt 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ataaataatatagtttgtctttatgccatttttacttctaccttggaaggtaacttccgt 259
Query: 361 gggacttcctttttcaaccacagttacacactccatcctccttggaaaagtttg------ 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gggacttcctttttcaaccacagttacacactccatcctccttggaaaagtttgtgctca 199
Query: 415 ----------tgcttgtcattgatcagtgttttagctttgttctctgtgtggcatttctg 464
||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 198 aagaaggacctgcttgtcagtgatcagtgttttggctttgttctctgtgtggcatttctg 139
Query: 465 tatactgaag 474
||||||||||
Sbjct: 138 tatactgaag 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
