Query= MSMg01no342_g18.b1 MSMg01no342_g18.b1 CHROMAT_FILE:
MSMg01no342_g18.b1 PHD_FILE: MSMg01no342_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:56 2005
(564 letters)
>mm_chr3_125799877_125800840
Length = 964
Score = 1029 bits (532), Expect = 0.0
Identities = 552/561 (98%), Gaps = 5/561 (0%)
Strand = Plus / Minus
Query: 7 gaattctagact---gtcttataaatggttgtgaagggctatatgtgtgctggggattga 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gaattctagactggag--ttataaatggttgtgaagggctatatgtgtgctggggattga 813
Query: 64 accctggtcctctagaagagcagctgatatcttaactactggaccatcacctatgccacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 accctggtcctctagaagagcagctgatatcttaactactggaccatcacctatgccacc 753
Query: 124 tatccccaaatttatcacaatttgcaagtgaaactgaagacaaaggagaagttcagccat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tatccccaaatttatcacaatttgcaagtgaaactgaagacaaaggagaagttcagccat 693
Query: 184 ttctgttaggttgtaggatggaggtcagcatatgacctaattatgccaagcagattattg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttctgttaggttgtaggatggaggtcagcatatgacctaattatgccaagcagattattg 633
Query: 244 tctttatcaatttagaattcatcactcctctttcattaccctcaaatatataaaatattg 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 632 tctttatcaatttagaattcatcactcctcagccattaccctcaaatatataaaatattg 573
Query: 304 tctttagagattgcttaatagagatgagggattctcattaatcacagtattataacatca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tctttagagattgcttaatagagatgagggattctcattaatcacagtattataacatca 513
Query: 364 ttattatgctttcaacaatgaacaggatttattacaagatcacactttctcataccattg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttattatgctttcaacaatgaacaggatttattacaagatcacactttctcataccattg 453
Query: 424 ctggatttcaaaataatagatgaagaagagatacaaatcatactacagagtagaanaaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 452 ctggatttcaaaataatagatgaagaagagatacaaatcatactacagagtagaaaaaga 393
Query: 484 ttaagtactgaaaaattttattagagctggcaagacaaaacagaaggctaaatacttgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttaagtactgaaaaattttattagagctggcaagacaaaacagaaggctaaatacttgct 333
Query: 544 taacaagcaccatgacttgag 564
|||||||||||||||||||||
Sbjct: 332 taacaagcaccatgacttgag 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_g18.g1 MSMg01no342_g18.g1 CHROMAT_FILE:
MSMg01no342_g18.g1 PHD_FILE: MSMg01no342_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:56 2005
(419 letters)
>mm_chr3_125679357_125680175
Length = 819
Score = 787 bits (407), Expect = 0.0
Identities = 416/419 (99%)
Strand = Plus / Plus
Query: 1 tccctctcttattgttttgacagatccataatcattttcaattcccagttaaacactcac 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccccctcttattgttttgacagatccataatcattttcaattcccagttaaacactcac 260
Query: 61 ctattcaaaacccattttctgacttttcttgtaacatttatccatatatctgtagttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattcaaaacccattttctgacttttcttgtaacatttatccatatatctgtagttctt 320
Query: 121 cctactttgtttaaaattggggtatttgcagtatttctggtgttctccctaaattacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctactttgtttaaaattggggtatttgcagtatttctggtgttctccctaaattacttc 380
Query: 181 attagaaaattttgtctttaattctttaaatggcatcaactcctaacagagcactgagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagaaaattttgtctttaattctttaaatggcatcaactcctaacagagcactgagct 440
Query: 241 taaaacagtaagaatgatgattaagggaaagaatattcaatttttctgtcacatatgcca 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaacagtgagaatgatgattaagggaaagaatattcaatttttctgtcacatatgcca 500
Query: 301 aggttttaaacatatttttggttcagaatgtgatatatttaatctgtagcataataacta 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aggttttaaacatatttttggttcagaatgtgatatatttaatctatagcataataacta 560
Query: 361 gaagttagccatgtatagaataagacattaggttaaaaatacactattggtctctgaaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagttagccatgtatagaataagacattaggttaaaaatacactattggtctctgaaa 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
