CTTTCTCACTTTTCCCCTTTCCTTTTCTTCCCCCCCCCTCCCGCCTTCTT
GTCTCCCCTTCTTCCCTTTCCCTCCCCGCCCTTGCTTCCTTGCCCCCTTC
CCCCCTTTCTTTTCCTTCCCCCCCTTCCCCCCTCCCCTCATTCGCCTATC
ATCTAATGCGATTCGCGAATCTGAAATCAATGTATTCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTAGGGCTGATAAGGTCCACAGTTACAGTATGTGG
ATAAAACGAATAATGAAGAGTCATGCTGTTAGTTTATTGTAATAAAATGT
GCATTAAAGTTAATGAAGCGTTGTCCTCAATAGGAAGAGCAGTGAAGAGG
CACAAAAGGAGAGGCGGAGGATATCAAATTTGTTGAACATCATGGAACCT
AGCCTCCTTCAGTTCTACATATCTCGACAGTGGTTGAATAAATTTAAGAC
CTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTCTCTGTATCCATG
GAGGTAAGAAATACTGTTAGGTAAAATAGTGATACTAAGTTGCTGTTTAA
TTTGCAATTAGGAAAGAATCAAGAGTCTCCTCTCCTGATTATTGTCCATC
CCCATCTAGAGCTGAGTGTGTTTAATTCCTTATGATTTTAGAAATTGGCC
TTGTGTGAAACCCAGTTCTGGAGCTAAAGAATACCAAAGACTATTTCAGT
GTCGGGAGAGCATTGATTTTACGTTAGTCAGTCACATGGATGGCTAATTA
CAGTTGGGTGAGCTTTCTACATACACTTTCCTTGGAGAGAGCCATTCCTG
TGTGCTGGGTTTAGCTGACATCTTTATCTGTAGCTCCTTCGTGATAAGCT
TGACTTTATAAN

Query= MSMg01no342_j01.g1 MSMg01no342_j01.g1 CHROMAT_FILE:
MSMg01no342_j01.g1 PHD_FILE: MSMg01no342_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:07 2005
         (538 letters)



>mm_chr3_152044356_152045297
          Length = 942

 Score = 1019 bits (527), Expect = 0.0
 Identities = 537/543 (98%), Gaps = 6/543 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagggctgataaggtccacagttacagtatgtggataaaacgaataatgaagag---- 56
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
Sbjct: 201 cttagggctgataaggtccacagttacagtatgt-gataaaacgaataatgaagagaaga 259

                                                                       
Query: 57  -tcatgctgttagtttattgtaataaaatgtgcattaaagttaatgaagcgttgtcctca 115
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctcatgctgttagtttattgtaataaaatgtgcattaaagttaatgaagcgttgtcctca 319

                                                                       
Query: 116 ataggaagagcagtgaagaggcacaaaaggagaggcggaggatatcaaatttgttgaaca 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ataggaagagcagtgaagaggcacaaaaggagaggcggaggatatcaaatttgttgaaca 379

                                                                       
Query: 176 tcatggaacctagcctccttcagttctacatatctcgacagtggttgaataaatttaaga 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcatggaacctagcctccttcagttctacatatctcgacagtggttgaataaatttaaga 439

                                                                       
Query: 236 cctttgctgaacctggccctatttcaaataatgattttctctgtatccatggaggtaaga 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctttgctgaacctggccctatttcaaataatgattttctctgtatccatggaggtaaga 499

                                                                       
Query: 296 aatactgttaggtaaaatagtgatactaagttgctgtttaatttgcaattaggaaagaat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatactgttaggtaaaatagtgatactaagttgctgtttaatttgcaattaggaaagaat 559

                                                                       
Query: 356 caagagtctcctctcctgattattgtccatccccatctagagctgagtgtgtttaattcc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caagagtctcctctcctgattattgtccatccccatctagagctgagtgtgtttaattcc 619

                                                                       
Query: 416 ttatgattttagaaattggccttgtgtgaaacccagttctggagctaaagaataccaaag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatgattttagaaattggccttgtgtgaaacccagttctggagctaaagaataccaaag 679

                                                                       
Query: 476 actatttcagtgtcgggagagcattgattttacgttagtcagtcacatggatggctaatt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actatttcagtgtcgggagagcattgattttacgttagtcagtcacatggatggctaatt 739

              
Query: 536 aca 538
           |||
Sbjct: 740 aca 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 942
Length adjustment: 10
Effective length of query: 528
Effective length of database: 932
Effective search space:   492096
Effective search space used:   492096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)