Query= MSMg01no342_j16.b1 MSMg01no342_j16.b1 CHROMAT_FILE:
MSMg01no342_j16.b1 PHD_FILE: MSMg01no342_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:10 2005
(471 letters)
>mm_chr3_84099646_84100515
Length = 870
Score = 868 bits (449), Expect = 0.0
Identities = 461/465 (99%), Gaps = 1/465 (0%)
Strand = Plus / Plus
Query: 7 ggaattcttcaaattgcatgccagcacactcgcagaaagaacaaaaaggagggatgaaga 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcttcaaaatgcatgccagcacactcgcagaaagaacaaaaaggagggatgaaga 266
Query: 67 cagacgtgaagtttctttaagtgtggagaatggaaagtaggttgcaccatgctagcaggt 126
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 267 cagacgtgaagtttctttaagtgtggagaatggaaggtaggttgcaccatgctagcaggt 326
Query: 127 agacagttatgacaggaaccctgacctcttttaaaaattaaatgagtcactttataagtg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agacagttatgacaggaaccctgacctcttttaaaaattaaatgagtcactttataagtg 386
Query: 187 ttgcacaaaaacccacaaccgagcacattagtggtgtcccacgtgaggctgtgatttgtg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgcacaaaaacccacaaccgagcacattagtggtgtcccacgtgaggctgtgatttgtg 446
Query: 247 taaatactgtgtgtagtgcttatgtcaagctaaacatactcaattcctcaaatatttatc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 taaatactgtgtgtagtgcttatgtcaagctaaacatactcaattcctcaaatatttatc 506
Query: 307 acttgtttacacagtcgaaagcacaccttttatagtacttttttcattttaatgaacttt 366
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 507 acttgtttacacagttgaaagcacaccttttatagta-ttttttcattttaatgaacttt 565
Query: 367 tggaagttttaaaatttggattctagagataaaagagtggaagtgagcccaggcagacat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tggaagttttaaaatttggattctagagataaaagagtggaagtgagcccaggcagacat 625
Query: 427 ccaggggttccttaggaacttgtcaaatccagagagctttggatg 471
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccaggggttccttaggaacttgtcaaatccagagagctttggatg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_j16.g1 MSMg01no342_j16.g1 CHROMAT_FILE:
MSMg01no342_j16.g1 PHD_FILE: MSMg01no342_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:10 2005
(429 letters)
>mm_chr3_84276579_84277408
Length = 830
Score = 762 bits (394), Expect = 0.0
Identities = 421/430 (97%), Gaps = 1/430 (0%)
Strand = Plus / Minus
Query: 1 ttgagcc-acagtattgacctcttttcctgccttgggaacatgttaactccttctaccag 59
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 630 ttgagccaacagtattgacctcttttcctgccttgggaacatgttaactccttccaccag 571
Query: 60 gcgccctgagagccctttaaactggttgtataatccctcctgaaactgctaagagcattc 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gcgccctgagagccttttaaactggttgtataatccctcctgaaactgctaagagcattc 511
Query: 120 ttaagaaatacaggaaacgcagggaccacagttgtgacaagtggactgtgaagtgaattg 179
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 510 ttaagaaatacaggaaatgcagggaccacagttgtgacaaatggactgtgaagtgaattg 451
Query: 180 gaaaagggagtcatttggagaagctacagcgtcttcaagtactggtcacacaggcttctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaaaagggagtcatttggagaagctacagcgtcttcaagtactggtcacacaggcttctc 391
Query: 240 tgtctgtcccttcatttggtcggacatcctttcagtattggaagagactcggtcatttcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgtctgtcccttcatttggtcggacatcctttcagtattggaagagactcggtcatttcc 331
Query: 300 ttagtgccctggtcttggcccagctcccagcagaggtgtctgagcagccggtcacatctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 330 ttagtgccctggtcttggcccagctcccagcagaggtgtctgagcagccggtcacgtctc 271
Query: 360 acccttgtctccaggttctcactgctatgatgattagaccgatgtgtgtagacttgaggc 419
|||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct: 270 acccttgtctccaggttctccctgctatgatgattagacaggtgtgtgtagacttgaggc 211
Query: 420 gtatgtccca 429
||||||||||
Sbjct: 210 gtatgtccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space: 344820
Effective search space used: 344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
