BAC Information

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BAC

Clone NameMSMg01-343A18
Chromosome3 (Build37)
Map Location 27,512,640 - 27,513,022
singlet/doubletsinglet
Overlap geneFndc3b
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A18.T7 (MSMg01no343_a18.b1)MSMg01-343A18.TJ (MSMg01no343_a18.g1)
ACCAG456452AG456453
length751771
length of high quality
(start - end)		34 (51 - 84)383 (68 - 450)
definitionCHROMAT_FILE: MSMg01no343_a18.b1 PHD_FILE: MSMg01no343_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:44 2005CHROMAT_FILE: MSMg01no343_a18.g1 PHD_FILE: MSMg01no343_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCCGCCGCTAAACAACTCACTATATTCAGAGGATCCGCGAAATTCCA
GGCATGCACTGCAGTGCTCCACTTTTTATGGNTGTTAAGAATCCAAACTC
ANGNCCTCGTGATTGTACAGCAAATGCTTTACTGCCTAAGGCACTTCCCT
GTCTTTNTGNCCTTCCTGCNTTATATGANNGTCTGTGGTTTAGCTTGGTT
TTGGTTTGGGCGGGGGAGGGGGGGGGTGGGGGGTGGGGCGGGGGGGTCAT
CTAACCCCTCATTCCTTCCTCAATTAACCCCATTTAATTCTTCTTTTGTT
TCCCCTCNGTGGGGGAGCNTCAATTTATTCCCCCATTAAATTTTTTTTTT
NNATTCCCATAACCCCCCCCACCCAAAAAAACCCCACAAAAAAAAATCCC
CCCTCCAAAAACCCCCCCCCAAACNNCCCCCACCCCAACCNAAAAAACCC
ACACCCTNCNACNCANNACCCCCCCCCCCTTTCCCCCCCCCCCNNAAACC
CCCCCCCCCCCCTTNCCCCCCCCCCAAAAACCCCCCCCAACAAACCCCCC
CACCCCCCCCCCCCCCCCCCCCNNCACCNNCCCCACCCCCCCCCCCCCCT
CCCACCCCCCCCCCCCCCACCCCCCCCCCCCACAAACCACCCCCCCCCAA
AACACCAACCNCCCCACCCCCCCCCCCCCCCCACACCTCCCCCCTCCCCA
ACCCAACCCCCCACCCCCCCTCTCCCCATTTTTTCTTTTTTTTGGTTGTT
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCACAGTCCTATCAGAAAGTTACAATCACTG
GCCCCAGGTTAAAACAATACATACTGCCAGGCAGTGGTGGCGCACACCTT
TAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGC
CAGCCTGGTCTACAGAGTGAATTCCGGGACAGCCCGAACTACAGAGAAAC
CCTGACTTGAAAAACCAAAAAAATAAAAAGATAAAACAGTACATACTGGG
TATCTGTCCTGGAAGGGGACTGAGCATCTGCTGGGAAAATATCAGGCACT
GACGGAACCCAGCCCTGACAGAGCCACTCTGCCCCCATGTGATAAGGCAA
TGTGCACAACAACCATGCCTCTCCCGTCTCCCAACCTGTACACTGGACTA
GACAATCGTGTCTCAGTGTCTACCGGCCTCGAGGAAAAGACTCTGCTAGT
GGAATTTCAGCTGCACGGCAGTAAACAGCTTGCTCGGGAGGAGAGTTCCA
TCCGGGTAAGCAGGGGGGGGAAAGGGGAAACACAACAGCCTTAGGGTCCC
TCTCGCCATGGGTGGGGAAAAAAAGGGCCTCGGGCCCGCGGGTATTTTCT
TCCCTTTAAGCCTTTTTTCCTATTTTTGGGAGGTCTTCGAATTTCATAAA
GGGGAAAAGTTCCTAGTATACTTTAAATGGCATTCCTCTTTCCCACTTTT
TCTTTTGGTGGGGGTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a18.g1 MSMg01no343_a18.g1 CHROMAT_FILE:
MSMg01no343_a18.g1 PHD_FILE: MSMg01no343_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:44 2005
         (383 letters)



>mm_chr3_27512440_27513222
          Length = 783

 Score =  679 bits (351), Expect = 0.0
 Identities = 375/383 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcacagtcctatcagaaagttacaatcactggccccaggttaaaacaatacatactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcacagtcctatcagaaagttacaatcactggccccaggttaaaacaatacatactgc 260

                                                                       
Query: 61  caggcagtggtggcgcacacctttaatcccagcactcaggaggcagaggcaggcggattt 120
           |||| |||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cagggagtggtggcgtacgcctttaatcccagcactcaggaggcagaggcaggtggattt 320

                                                                       
Query: 121 ctgagttcgaggccagcctggtctacagagtgaattccgggacagcccgaactacagaga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ctgagttcgaggccagcctgatctacagagtgaattccgggacagcccggactacagaga 380

                                                                       
Query: 181 aaccctgacttgaaaaaccaaaaaaataaaaagataaaacagtacatactgggtatctgt 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccctgtcttgaaaaaccaaaaaaataaaaagataaaacagtacatactgggtatctgt 440

                                                                       
Query: 241 cctggaaggggactgagcatctgctgggaaaatatcaggcactgacggaacccagccctg 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 cctggaaggggactgagcatctgctgggaaaatatcaggcactgacagaacccagccctg 500

                                                                       
Query: 301 acagagccactctgcccccatgtgataaggcaatgtgcacaacaaccatgcctctcccgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagagccactctgcccccatgtgataaggcaatgtgcacaacaaccatgcctctcccgt 560

                                  
Query: 361 ctcccaacctgtacactggacta 383
           |||||||||||||||||||||||
Sbjct: 561 ctcccaacctgtacactggacta 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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