BAC Information

Click to search

BAC

Clone NameMSMg01-343I16
Chromosome3 (Build37)
Map Location 27,768,303 - 27,768,698
singlet/doubletsinglet
Overlap geneE030011K20Rik
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
Downstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343I16.T7 (MSMg01no343_i16.b1)MSMg01-343I16.TJ (MSMg01no343_i16.g1)
ACCAG456827AG456828
length780774
length of high quality
(start - end)		520 (33 - 552)396 (64 - 459)
definitionCHROMAT_FILE: MSMg01no343_i16.b1 PHD_FILE: MSMg01no343_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:25 2005CHROMAT_FILE: MSMg01no343_i16.g1 PHD_FILE: MSMg01no343_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACGAAAA
TGACGGCATAACATATACAAATTTATGGAACACGATGAAAGCAGTGTTAA
GGAAAGTTCATTGACTAAGTGCCTTCATGAAGAAATCTCATAAGAACTAC
TTAACAGCACACCTAAAAGCTCTAGAAAAAAAGAAGCAAACACTCCCAAG
AGGAGTAGAAGGCAGAAAATAATAAAACTCAGAGTTGAAATCGGTGAATT
AGAAACAAAGAATCAAGGAAACTAAGAGCTGGTTCTTTGAGTAAACAAGA
TAGAGAACCCCTTAGTCAAACTAACTAAAAGGTGGAGAGACAGTATGCAA
ATCAGCAACATCAGAAATGAAAGAGGAGACATAATAACAGAAACTGAGGA
AATTTTTTTAAAAATCACTAGGTTCAAAAAGTTGTTCTCCACAAAATTGG
AAAATGTAAATGAAATGGATGATTTTCTAGATAGACACCAATTTCCAAAG
TTAAATCAAGATGAAGTAAACTATTTAAATAGTCCTATAGCCCCAAAGGA
AATAGAAGCAGTCATTTAAAGTCCCCCAACCAAAAAAGGCCCCAGAACCA
GGTAATCTTAGCAAAGAATTCCTCCAGACTTTCTAAAAAGATTTTAAACC
CATTATTTCTTCCAACTATTTCCCCTCAATAGAATACCAAAGAGGCTTTG
TCCCACCCTCTTTTCTTTTAAGGCCCCGTTTATCCCGAATACCTTAACCC
TCCCTATAACCTCTTTCCGAAGAAATGAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGGATAGTGAAAGACCCTGTCTCATGAAACAACATA
TAAGTATGTAGGAATGACACCTACAGATGCTCTTTGGTCTCTACATACAT
GCACACGCATGCATCTGCACACATATGAACACGCATGCACATGAAGACAC
AAACATAAACACATGCTCACAGAGAAAGACTTGTTTGCAGCCTTCTGGGG
AGATTTGCTTCATCTCGACGGTATATTGCTTTGTGCTACAGCTGTTTAAG
CTACCACCCATTTTAATTATTTCCTTGACATCACTGGTATAACTATCATT
CTCTTTGGAAAAGGAAAGATGGTATAAGAAACACTGATGTGAAAATTCAA
TTTAAAAAGGCATAAAAATGATGATCCTTTTGACAATATGCCTCGAGATT
ATTTTCACTAAGTCTTTAGGTTACAGTTTTCTGCCTAACATGTCAAGGGA
GGGCATCACGGGACAATATTTCTTCCTTAAAAGAAAAAAAAAATTAGGGA
TTATTCCCAAGTTAAAATTTTTCCCCCAACCCCCCAAATGGAAAATCAAA
AACAGTGTTTTTTACATCATGGGGCCCACAAAAAAATACTCTACGTTTTT
CTCTATTTTTTCTTCTCCTAAAAAACCGTGTTACGTTCTCCCCTTTGTAT
TTTTCTGCCTTTATTTACCTAGTTAAACCGACTCTAAAATACATATATCC
TCCCTTTAACTTTTTATTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_i16.g1 MSMg01no343_i16.g1 CHROMAT_FILE:
MSMg01no343_i16.g1 PHD_FILE: MSMg01no343_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:25 2005
         (396 letters)



>mm_chr3_27768103_27768898
          Length = 796

 Score =  750 bits (388), Expect = 0.0
 Identities = 394/396 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatagtgaaagaccctgtctcatgaaacaacatataagtatgtaggaatgacaccta 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatagtggaagaccctgtctcatgaaacaacatataagtatgtaggaatgacaccta 260

                                                                       
Query: 61  cagatgctctttggtctctacatacatgcacacgcatgcatctgcacacatatgaacacg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cagatgctctttggtctctacatacatgcacatgcatgcatctgcacacatatgaacacg 320

                                                                       
Query: 121 catgcacatgaagacacaaacataaacacatgctcacagagaaagacttgtttgcagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgcacatgaagacacaaacataaacacatgctcacagagaaagacttgtttgcagcct 380

                                                                       
Query: 181 tctggggagatttgcttcatctcgacggtatattgctttgtgctacagctgtttaagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggggagatttgcttcatctcgacggtatattgctttgtgctacagctgtttaagcta 440

                                                                       
Query: 241 ccacccattttaattatttccttgacatcactggtataactatcattctctttggaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacccattttaattatttccttgacatcactggtataactatcattctctttggaaaag 500

                                                                       
Query: 301 gaaagatggtataagaaacactgatgtgaaaattcaatttaaaaaggcataaaaatgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagatggtataagaaacactgatgtgaaaattcaatttaaaaaggcataaaaatgatg 560

                                               
Query: 361 atccttttgacaatatgcctcgagattattttcact 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccttttgacaatatgcctcgagattattttcact 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |