Query= MSMg01no343_j24.b1 MSMg01no343_j24.b1 CHROMAT_FILE:
MSMg01no343_j24.b1 PHD_FILE: MSMg01no343_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:31 2005
(330 letters)
>mm_chr3_105642723_105643452
Length = 730
Score = 630 bits (326), Expect = 0.0
Identities = 329/330 (99%)
Strand = Plus / Minus
Query: 1 aatggagaatgtagacagcgagcgactgagtgtctaagtcacagaagaatttcatacacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aatggagaatgtagacagcgagcgactgagtgtctaagtcacagaagaatttcatacacg 471
Query: 61 tgtgtgatttaattctctctgctttctagttcccaaggcattagctcctttagcagagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgtgtgatttaattctctctgctttctagttcccaaggcattagctcctttagcagagga 411
Query: 121 gcaagctgactcggggcctaggatatcccttggtgatgcatctagtgtgaaatggaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gcaagctgactcggggcctaggatatcccttggtgatgcatctagtgtgaaatggaataa 351
Query: 181 agtttgaacatggctatgtctctttccaacatacaagttctttcctctgtacaaggcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agtttgaacatggctatgtctctttccaacatacaagttctttcctctgtacaaggcttt 291
Query: 241 cagacattacccaagtgacaggacagtaaagaatgatcaggaagtggccaaaccgagagc 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 290 cagacattacccaagtgacaggacagtaaagaatgaccaggaagtggccaaaccgagagc 231
Query: 301 aggaaaaggaggaactgggccataccagat 330
||||||||||||||||||||||||||||||
Sbjct: 230 aggaaaaggaggaactgggccataccagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_j24.g1 MSMg01no343_j24.g1 CHROMAT_FILE:
MSMg01no343_j24.g1 PHD_FILE: MSMg01no343_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:32 2005
(370 letters)
>mm_chr3_105616122_105616892
Length = 771
Score = 619 bits (320), Expect = 0.0
Identities = 359/372 (96%), Gaps = 3/372 (0%)
Strand = Plus / Plus
Query: 1 caggccagcttgggctacacaaaactttattttttaaaaaaacaaacgagggctagagag 60
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||
Sbjct: 201 caggccagcttgggctacacaaaactttatcttttaaaaaaacaaacaagggctacagag 260
Query: 61 atggctcagaagttaggagcactgactgctcttccagaggtcctgagttcaattctcagc 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 atggctcagaagttaggagc-ctgactgctcttccagaggtcctgagttcaagtctcagc 319
Query: 121 aactaccttgtggctcacaaccatctgtaatgggacccaatgtgctcttctggtgtgtct 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aactaccttgtgactcacaaccatctgtaatgggacccaatgtgctcttctggtgtgtct 379
Query: 181 gaggacaactacagctactcatataaataaaagtaaataactcttt-aaaaaaatgaaac 239
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 gagttcaactacagctactcatataaataaaagtaaataactcttttaaaaaaatgaaat 439
Query: 240 caaaacaatcgcctaaagccatagaaatgaaatctagtaaaaaaaaatt-gaagaataat 298
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 440 caaaacaatcgcctaaagccatagaaatgaaatctagtaaaaaaaaaatcgaagaataat 499
Query: 299 tagcaaagagtcttgattaaaaacagacacaggattgtggtctcctttcatggcagcctg 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tagcaaagagtcttgatttaaaacagacacaggattgtggtctcctttcatggcagcctg 559
Query: 359 cttacccagctg 370
||||||||||||
Sbjct: 560 cttacccagctg 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space: 275082
Effective search space used: 275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
