BAC Information

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BAC

Clone NameMSMg01-343L17
Chromosome3 (Build37)
Map Location 128,354,471 - 128,549,027
singlet/doubletdoublet
Overlap geneLOC100043393
Upstream geneAlpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneEG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343L17.T7 (MSMg01no343_l17.b1)MSMg01-343L17.TJ (MSMg01no343_l17.g1)
ACCAG456968AG456969
length788780
length of high quality
(start - end)		427 (28 - 454)403 (62 - 464)
definitionCHROMAT_FILE: MSMg01no343_l17.b1 PHD_FILE: MSMg01no343_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:40 2005CHROMAT_FILE: MSMg01no343_l17.g1 PHD_FILE: MSMg01no343_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,354,471 - 128,354,889)(128,548,625 - 128,549,027)
sequence
CCGCTATACGACTCACTATATTTCGAGGATCCGCGGAATTCTTCAAGCTA
TTTGCTAATCTATGGTCATTAACAGTTAAGCTGAGAGGGAGACCTGAGAG
CTCACCAGTCACAGTTGGTAATTAAGGCAGCAAACCCTAGCTAGGTAAAG
TAACATTCTCAGCACTCTATATGATAATGGTAGGAGGATCTTATACCCCA
ACTCTCCCAACATGCGCCTGCCATTTTCTGGGTCTAGGGTGGAGTAGCTA
GGGGTGGTATAAGATTAAAAAATTACTGAGTACTGTATATTTTGGGGATG
AGATCTCAGTAGAGGTACCTGAGGGGCTAGAGAGGCCTCCATGGAGATGC
CTGGGTTAAGCTGACAGCACAGTTTTTGTCAACTTGCCACAAACTAGGAT
CATTTTGGAAACGGAACTTTGTGAATATTCCTCCATCATGCTGGTCTGTA
GGCACATGGTTGGGAGCATTTCATCAGCTGAATACTATGATAGCGTCCAG
CACTCCCTAACTTGAAGTCCCTGCCCTCACTTCCTATCTTTATAGACCAT
GACTAATATTAGTTAGCCCAATGTACCCCTTTCCTTCCCCAAACGTTCCT
CTGGTCAATCGCGTTTATATGTAGAACTCCGCGCCTCCTTTTGTTGTCAT
CTCTATCTCTCATCTACTCTCGTTGACTCGTCATTCGTCGCTTCCACGCT
GGTTTCCTTCATCTTTTATACTTAAGCAGCGCCAGTCCACTTCCTTCTGT
AATACGACATTCTCCTTCCCCTCTCTTTCCCCAATTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTTTAGTTCTGTTACTGGACAACGGAGAAGATAAAATT
GACTATTGAAAATTGCTGAAGGATGCTGAGTGTCTTCTATGATCCATGGA
CTTTGCGACAATTTGACTTGACTCATAGCTTCCAATTTTGCCACAACCCA
TAGAGGAAGGGATTTATCTCGTCTTAAAGATGAGAAAACAAGGGTAAACA
GCTTTAATAATATAGCCCATAACAATAATAATGAAATCATTTTCTCCAAA
TAAGTATTAGAGATAAATTCCTTATAAACAAAAATAAGATTGATTATAAT
AACTACTAATTTAAGTTAGCAAAGTCTTTAATTTTTTTAGTATCTATTAT
GCTTTTAGAAGTACAAGGCTCCCTGGTACTAAAGGCAGAGGAGGCTCANA
TTCCTTCTATAAAATAGCATAGTATTTGCATGTAATCTATTCAAAGGAAT
CTTCCATAATATTGTAACAATATAACCATGCCATCATTATCCAAATGATT
GCCCGAGGGCCTATATATTTTAGAATAAACCCCAAGGAATGTGTTTTATG
GGATCACCCTTGAACTAATTACCTTTTTGGGAAAGGGGGGGGGGAGAATA
TCCCATAACCCCACCTTTTTAAAATTGATTGGCCCGGAGGCGGGTCCCCA
CCCCATATTGTTATGGGTTTTTTGTTGGCGTGGGGCAATTAATAAATAAA
TCTTTGGGATTTTTTTTTTTGATTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_l17.b1 MSMg01no343_l17.b1 CHROMAT_FILE:
MSMg01no343_l17.b1 PHD_FILE: MSMg01no343_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:40 2005
         (427 letters)



>mm_chr3_128354263_128355089
          Length = 827

 Score =  772 bits (399), Expect = 0.0
 Identities = 414/419 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcttcaagctatttgctaatctatggtcattaacagttaagctgagagggagacct 68
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcttcaagctaaatgctaatctatggtcattaacagttaagctgagagggagacct 268

                                                                       
Query: 69  gagagctcaccagtcacagttggtaattaaggcagcaaaccctagctaggtaaagtaaca 128
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 269 gagagctcaccagtcacagttggtaattaaggcaacaaaccctagctaagtaaagtaaca 328

                                                                       
Query: 129 ttctcagcactctatatgataatggtaggaggatcttataccccaactctcccaacatgc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttctcagcactctatatgataatggtaggaggatcttataccccaactctcccaacatgc 388

                                                                       
Query: 189 gcctgccattttctgggtctagggtggagtagctaggggtggtataagattaaaaaatta 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcctgccattttctgggtctagggtggagtagctaggggtggtataagattaaaaaatta 448

                                                                       
Query: 249 ctgagtactgtatattttggggatgagatctcagtagaggtacctgaggggctagagagg 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgagtactgtatattttggggatgagatctcagtagaggtacctgaggggctagagagg 508

                                                                       
Query: 309 cctccatggagatgcctgggttaagctgacagcacagtttttgtcaacttgccacaaact 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cctccatggagatgcctgggttaagctgacagcacagtttttgtcaacttgccacaaact 568

                                                                      
Query: 369 aggatcattttggaaacggaactttgtgaatattcctccatcatgctggtctgtaggca 427
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aggatcatttcggaaacggaactttgtgaatattcctccatcatgctggtctgtaggca 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_l17.g1 MSMg01no343_l17.g1 CHROMAT_FILE:
MSMg01no343_l17.g1 PHD_FILE: MSMg01no343_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:40 2005
         (403 letters)



>mm_chr3_128548425_128549227
          Length = 803

 Score =  766 bits (396), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttagttctgttactggacaacggagaagataaaattgactattgaaaattgctgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 actttagttctgttactggacaacggagaagataaaattgactattgaaaattgctgaag 544

                                                                       
Query: 61  gatgctgagtgtcttctatgatccatggactttgcgacaatttgacttgactcatagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gatgctgagtgtcttctatgatccatggactttgcgacaatttgacttgactcatagctt 484

                                                                       
Query: 121 ccaattttgccacaacccatagaggaagggatttatctcgtcttaaagatgagaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 483 ccaattttgccacaacccatagaggaagggatttatctcatcttaaagatgagaaaacaa 424

                                                                       
Query: 181 gggtaaacagctttaataatatagcccataacaataataatgaaatcattttctccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gggtaaacagctttaataatatagcccataacaataataatgaaatcattttctccaaat 364

                                                                       
Query: 241 aagtattagagataaattccttataaacaaaaataagattgattataataactactaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagtattagagataaattccttataaacaaaaataagattgattataataactactaatt 304

                                                                       
Query: 301 taagttagcaaagtctttaatttttttagtatctattatgcttttagaagtacaaggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taagttagcaaagtctttaatttttttagtatctattatgcttttagaagtacaaggctc 244

                                                      
Query: 361 cctggtactaaaggcagaggaggctcanattccttctataaaa 403
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 243 cctggtactaaaggcagaggaggctcaaattccttctataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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