Query= MSMg01no344_l08.b1 MSMg01no344_l08.b1 CHROMAT_FILE:
MSMg01no344_l08.b1 PHD_FILE: MSMg01no344_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:58 2005
(479 letters)
>mm_chr3_59169331_59170209
Length = 879
Score = 849 bits (439), Expect = 0.0
Identities = 468/487 (96%), Gaps = 16/487 (3%)
Strand = Plus / Minus
Query: 1 attcttggagaattaagggttgtagctgtacatagttatatcaccagtgacacttttcct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 643 attcttggagaattaagggttgtagctgtacatagttatttcaccagtgacacttttcct 584
Query: 61 cttgaatatgttttggctgttgctatgagaaacctgagggccaagccaccagttctgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cttgaatatgttttggctgttgctatgagaaacctgagggccaagccaccagttctgcat 524
Query: 121 atacagtgagaaacaataaaacattgctgtttaactttgcagataaaacacaaagcttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atacagtgagaaacaataaaacattgctgtttaactttgcagataaaacacaaagcttac 464
Query: 181 caaatctctggctccctagaggtgtgaccatagaaaaatcaagcgtaaataagctcctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 caaatctctggctccctagaggtgtgaccatagaaaaatcaagcgtaaataagctcctac 404
Query: 241 acaagggtgagtcttcatttcagtcatgtgtcaggatgcatagggcagagatggcccatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acaagggtgagtcttcatttcagtcatgtgtcaggatgcatagggcagagatggcccatt 344
Query: 301 cagtaattgctgtctaccacagaagtgtaaaacctgtgaaaggtgatctactcaagctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagtaattgctgtctaccacagaagtgtaaaacctgtgaaaggtgatctactcaagctga 284
Query: 361 gactcctagatttaaatcggagaataaagaataaagaaaagcatgttggaaaatgaatgt 420
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 283 gactcctagatttaaatcagagaataaagaaaaaagaaaagcatgttggaaaatgaatgt 224
Query: 421 tgaactcttaacacttcatta--------tgctggcataatgcctaacaccaaaaggctt 472
||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 223 tgaactcttaacacttcattatgtaatgttgctggca--------aacaccaaaaggctt 172
Query: 473 tatcttg 479
|||||||
Sbjct: 171 tatcttg 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_l08.g1 MSMg01no344_l08.g1 CHROMAT_FILE:
MSMg01no344_l08.g1 PHD_FILE: MSMg01no344_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:58 2005
(323 letters)
>mm_chr3_59022443_59023165
Length = 723
Score = 615 bits (318), Expect = e-180
Identities = 321/322 (99%)
Strand = Plus / Plus
Query: 1 atagaggagtgattaattatgagttggaatcataaatggagaatttcaaagagattggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaggagtgattaattatgagttggaatcataaatggagaatttcaaagagattggta 260
Query: 61 taaaatcacttctgggaaatgaattcatatattaaatagtaaatagtagaaaataataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaatcacttctgggaaatgaattcatatattaaatagtaaatagtagaaaataataat 320
Query: 121 ccaaaaaattttcctttgcattgagaaatatctttgcctgtgttcagtcatgcaataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaaaattttcctttgcattgagaaatatctttgcctgtgttcagtcatgcaataaaa 380
Query: 181 tattagcctcacagagactcatgatttagagtgcttttagcccatgcatttctcgttttc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tattagcctcacagagactcatgatttagagtgcttttagcccatgcatttctcattttc 440
Query: 241 agctcattcattatatttgaagtttgtatatgtttttgaatatcattcagagtgaatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctcattcattatatttgaagtttgtatatgtttttgaatatcattcagagtgaatcct 500
Query: 301 aaaatggtaataatgatgatgc 322
||||||||||||||||||||||
Sbjct: 501 aaaatggtaataatgatgatgc 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
