Query= MSMg01no345_g03.b1 MSMg01no345_g03.b1 CHROMAT_FILE:
MSMg01no345_g03.b1 PHD_FILE: MSMg01no345_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:49 2005
(323 letters)
>mm_chr3_90394660_90395382
Length = 723
Score = 598 bits (309), Expect = e-175
Identities = 315/317 (99%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcctactgatggggggtagggagggcagtgaagctctgattttctcattatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcctactgatggggggtagggagggcagtgaagctctgattttctcattatca 264
Query: 65 agatgaagctggggcctagcaaagattagtttcttcatactctgaggaatacccaggaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatgaagctggggcctagcaaagattagtttcttcatactctgaggaatacccaggaac 324
Query: 125 cccccccccccacacacacacacgcacacacactccagtaggcctattggagacacttac 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccccccccccc-cacacacacacgcacacacactccagtaggcctattggagacacttac 383
Query: 185 atcataagtctatctgtccttccttactgaccttcttggtacctcacaagggtttcccgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcataagtctatctgtccttccttactgaccttcttggtacctcacaagggtttcccgc 443
Query: 245 ccacggtagacctggctgcccaccttggaaataaaagctgcacgctgatgtcagggaagg 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccacggtagacctggctgcccatcttggaaataaaagctgcacgctgatgtcagggaagg 503
Query: 305 tgttggaggtgggttgg 321
|||||||||||||||||
Sbjct: 504 tgttggaggtgggttgg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_g03.g1 MSMg01no345_g03.g1 CHROMAT_FILE:
MSMg01no345_g03.g1 PHD_FILE: MSMg01no345_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:49 2005
(249 letters)
>mm_chr3_90554222_90554871
Length = 650
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 1 tctcccctattttcattttaacctcatggagtcttacccccac-gagaagatgatagcta 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 tctcccctattttcattttaacctcatggagtcttacccccactgagaagatgatagcta 390
Query: 60 aacaacaagcacatccatgcccactgaggaccctcagctggcccagccaacagatgaggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aacaacaagcacatccatgcccactgaggaccctcagctggcccagccaacagatgaggg 330
Query: 120 cctagttggcttggtctgccttgcctggcatttccatccttcagccttcgatttcagaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctagttggcttggtctgccttgcctggcatttccatccttcagccttcgatttcagaag 270
Query: 180 ctgtccctcctccaacagctgtcaccgcctccagacttagttctctctgattttagagga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgtccctcctccaacagctgtcaccgcctccagacttagttctctctgattttagagga 210
Query: 240 aagcccttc 248
|||||||||
Sbjct: 209 aagcccttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
