NNNNAAAANNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCACTAAACCCTAGTTTGTTGAATCAATAAGTTTAC
TTATACGTGAATTCACAAGAAGATACACATAAGAACAAGGGCATTTTATG
GGCAGTTACAGCCCCACAAAACATTTCCACAGGGAGATACATTTAATAAT
TATGCCCTCTCCTTCATCATGGAATGCTAATATTTGAATATGTAAGTAGG
AGTTTGGTAAGAAGTGTTTTGTGTCCTTACTATTCTCAGCTTCCCTTAGT
CTCCCATAGTTATAGATAAGCAGAAAACCAAGATAATATGACAATATGAT
TGAGTAGAGTCTGTTATATAAATGGTACTATGTGAAGTTTTTAAATGCTT
ACTAATGAAATACCAGAGTGCACATTTAGATATGTGTTTATGTGTATTAT
TTTTGAGAAAGTAACCTTTGCCAGTGAATGCTCATAATGTTTAAAAAGGA
TGATTATTGGCCTAGAATAACTCGCTTTGTGATGTCTCAAATATAAAGAG
ATGAAAATGTGAAAATGACACAGGTTCAGTAAACACTGCACTCCACACTG
GTTTCTAAGGTAAAGCTGTGCACTTGTGGCAGGCTTATTATAAACTGAGC
CATGCTCAAAACTGGTACTGGGGGACAGAAACTCCCAAAACCCTGAAAAT
GAAGTCCCGGATTTTTGAAGAAATTGGCAAATTTTGAATTTTTGGTGGAG
GAGGGAATTTCCA

NNNNNNNNNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTTCATACCTAA
ACATGATAAAAGCAATCTACAGCAAACCAGTATCCAACATCAAAGTAAAT
GGTGAGAAGCTGGAAGCAATTCCACTAAAATCAGGGACTAGACAAGGCTG
CCCATTTTTTTTCCTACCTATTCAACATTGTACTTGAAGTCCTAGCCAGA
GCAATTTGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGATGA
AGTCAAAATATCACTTTTTGCAGATGATGTGATAGTATATATAAGTGACC
CTAAAAATTTCGGCAGAGGACTCCTAAACCTGATAAACAGCTTCGGTGAA
GTAGCTGGATATAAAATAACTCAAACAAGTCAATGGCCTTTCTCTATACA
AAGAGTAAACAGGCTGAGAAAGAAATTATGGGAACAACACCCTTCTTAAT
AGTCACAAATAATATAAAATACCTTGGNTGTGACCCTAATTAAGGAAGTG
AAAGATGATAAGAACTTTCAGTCTCTGAAGAAAAGAATTTAAGAAGATCT
CCGAAGATGGGAAGATCCCCCCTGCTCATGGATGGGGAGGATCAACATTT
GTAAAAGGTTATACTTTTCCCAAAGAATTCTCAAAATTCATTGGGATCCC
CCAAAAAAATTCCACTCCATTCTTTCCCCAAATTTAAAAAAAGAAACTCG
GGAAACTTTCCTTGCCCACAAAAAAAAACAAA

Query= MSMg01no345_g22.b1 MSMg01no345_g22.b1 CHROMAT_FILE:
MSMg01no345_g22.b1 PHD_FILE: MSMg01no345_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:53 2005
         (433 letters)



>mm_chr3_45779456_45780285
          Length = 830

 Score =  779 bits (403), Expect = 0.0
 Identities = 422/429 (98%), Gaps = 3/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaaaccctagtttgttgaatcaataagtttacttatacgtgaattcacaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaaaccctagtttgttgaatcaataagtttacttatacgtgaattcacaaga 264

                                                                       
Query: 65  agatacacataagaacaagggcattttatgggcagttacagccccacaaaacatttccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatacacataagaacaagggcattttatgggcagttacagccccacaaaacatttccac 324

                                                                       
Query: 125 agggagatacatttaataattatgccctctccttcatcatggaatgctaatatttgaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggagatacatttaataattatgccctctccttcatcatggaatgctaatatttgaata 384

                                                                       
Query: 185 tgtaagtaggagtttggtaagaagtgttttgtgtccttactattctcagcttcccttagt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 tgtaagtaggagtttggtaagaagtgttttgtgtccttactattctcagcttccctta-t 443

                                                                       
Query: 245 ctcccatagttatagataagcagaaaaccaagataatatgacaatatgattgagtagagt 304
           ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 ctccca--gttatagataagcagaaaatcaagataatatgacaatatgattgagtagagt 501

                                                                       
Query: 305 ctgttatataaatggtactatgtgaagtttttaaatgcttactaatgaaataccagagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 502 ctgttatataaatggtactatgtgaagtttttaaatgcttactaatgaaataccagagta 561

                                                                       
Query: 365 cacatttagatatgtgtttatgtgtattatttttgagaaagtaacctttgccagtgaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 562 cacatttagatatgtgtttatgtgtattatttttgagaaagtaacctttgccactgaatg 621

                    
Query: 425 ctcataatg 433
            ||||||||
Sbjct: 622 ttcataatg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 830
Length adjustment: 9
Effective length of query: 424
Effective length of database: 821
Effective search space:   348104
Effective search space used:   348104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)