TTTATAAATTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCACTGTATTACCACATGTTTAGTGCTTTTATTTGC
TGAGTTATGTTCCTTACATTTAAAGGAAATTGTAATTATACACACACACA
CACACACACACACACACACACACACATATATATATTACAATTTATACATA
TTAAAAATAAAACCTTCATATTATCACCTGACTATAAATTTAAAAAATAG
ATTGAGAGAAAACTTAAGGGAAATAGACAGCACACAAAAACAAAACCCGC
ATAGCCTAAAAGACAGATAAACATTTTGGTGAGGACATATTATATAAGCA
GACTCAGTTTAAAATCGAAAATGCCCACTAAAGGGGAATTCATTGTAACT
TCATGCCTTTTGTGTCTAAAGTCCAGTGCACGGTGAACTAGTGCTCTGGG
GTGAGCTCTGGGAAGCCTAGGACTGGTAGAGTGCCAGCTCACCTGGAAAA
ACAGCCCTGGGCCCTTGCTCTCCCATTCACCTCTAGCTCAGTAAGCCTCC
TGGAATGTAAGCATTCAGGAATGCTCTGGGAGGAGGGGAAAGGGTTAGGA
GCGAGTACACATCCGGTTAAAAATAAAAATATCGAAGTCTCCAGAACGAT
TAAAGTGTTAAGGAGTCTTGATGGTGCCCCCAGTTCCTTAACAGCTCTCA
ACAGGCTGTCTAAGCTCCCTTCTTTGGTCCATCTAGAGTG

TTTTTTTTTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGGTCATGGTCAC
TCTTTGAAAACCTGCTCCTTGGAGTCTCTCTCTAAAGTCCTTCATGACCA
GAGCTGCAAACGCAGACATTGCAATATTAATACTGTCGACCTTACAGGAG
CCAGAGTCACCTCAGAGTCAAACCTCTGACTGAGCATACCGTGAGGGTGT
TTGTGGAAAGGTTCGTGACAAGGGCTGACACACCCTAAATGTGGGTCTCC
CCAGCCCCCATTCATGGGCTGGTGTCTTGTTTTTATTGAAAAGGAGACAG
TGAGCTGAGCACCAGACATTGTGTCTCCAAGCTTCCTGACCACAGTGCAG
TGTGAGCAGCTGCCTGGTGCTCCAGCCGCCACCGTCCTCTGCCTTGAGCC
AAGATAAGTCCTCCCTTTCTTAAGTCATTTCTTTCCGTGTATTTTATCAG
TGTACACTACAAAAAGAAGAGATATATAAACTTCCAGGTACTAATGCTTT
CCTTTTATGATCTGAGTGTTTTGAGGTCTGATATTCCTCCCTATGCGTCT
ATCTTTCTGTATCTGTATAATAAAAATATCTTTTATCCCCTGCTCATTTC
CTCAAGACACAGGTGATAAACTTGGTGTTTATTTATAATTCCCCACTCTA
TACTCATGAAACTATCCCGCATCTCGACTTGTCTTTATT

Query= MSMg01no345_i16.b1 MSMg01no345_i16.b1 CHROMAT_FILE:
MSMg01no345_i16.b1 PHD_FILE: MSMg01no345_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:00 2005
         (551 letters)



>mm_chr3_21921516_21922466
          Length = 951

 Score =  774 bits (400), Expect = 0.0
 Identities = 514/558 (92%), Gaps = 15/558 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactgtattac-cacatgtttagtgcttttatttgctgagttatgttccttaca 63
           |||||||||||||  || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattccactgtaagactcacatgtctagtgcttttatttgctgagttatgttccttaca 257

                                                                       
Query: 64  tttaaaggaaattgtaatta------tacacacacacacacacacaca--cacacacaca 115
           ||||||||||||||||||||      || | | | | | | | | | |   | | | | |
Sbjct: 258 tttaaaggaaattgtaattatataattatatatatatatatatatatatgtatatatata 317

                                                                       
Query: 116 cacacatatatatattacaatttatacatattaaaaataaaaccttcatattatcacctg 175
            ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacac--atatatattacaatttatacatattaaaaataaaaccttcatattatcacctg 375

                                                                       
Query: 176 actataaatttaaaaaatagattgagagaaaacttaagggaaatagacagcacacaaaaa 235
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 actataaatttaagaaatagattgagagaaaacttaagggaaatagacagcacacaaaaa 435

                                                                       
Query: 236 caaaacccgcatagcctaaaagacagataaacattttggtgaggacatattatataagca 295
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caaaacccacatagcctaaaagacagataaacattttggtgaggacatattatataagca 495

                                                                       
Query: 296 gactcagtttaaaatcgaaaatgcccactaaaggggaattcattgtaacttcatgccttt 355
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 496 gactcagtttaaaatcgaaaatgcccactaaaggggaattcattgtcacttcatgccttt 555

                                                                       
Query: 356 tgtgtctaaagtccagtgcacggtgaactagtgctctggggtgagctctgggaagcctag 415
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtgtctaaaatccagtgcactgtgaactagtgctctggggtgagctctgggaagcctag 615

                                                                       
Query: 416 gactggtagagtgccagctcacctggaaaaacagccctgggcccttgctctcccattcac 475
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 616 gactggtagagtgccagctcacctggaaaaacagccctgggctcttgctctcccattcac 675

                                                                       
Query: 476 ctct--agctcagtaagcctcctggaatgtaagcattcaggaatgctctgggaggagggg 533
           ||||  |||   |||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct: 676 ctcttgagcg--gtaagccttctggaatggaagcattcaggaatgctctggggggagggg 733

                             
Query: 534 aaagggttaggagcgagt 551
           ||||||||||||||||||
Sbjct: 734 aaagggttaggagcgagt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)