Query= MSMg01no345_j20.b1 MSMg01no345_j20.b1 CHROMAT_FILE:
MSMg01no345_j20.b1 PHD_FILE: MSMg01no345_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:06 2005
(477 letters)
>mm_chr3_60403512_60404382
Length = 871
Score = 864 bits (447), Expect = 0.0
Identities = 464/473 (98%), Gaps = 6/473 (1%)
Strand = Plus / Plus
Query: 5 gaattccttccccttcccattcacaagctatgagtagagtccacagcagccaaatgcttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccccttcccattcacaagctatgagtagagtccacagcagccaaatgcttc 264
Query: 65 attcttagacaaaattgaatatgggtttattcataatacctgttagctctgagtgctgtc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcttagacaaaattgaatatgggtttattcataatacctgttagctctgagtgctgt- 323
Query: 125 tatgttctaaacagtaattcactaaaactagttctgtatctgtttacaacatggtgcttg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 -----tctaaacagtaattcactaaaactagttctgtatctgtttacaacatggtgcttg 378
Query: 185 cctagaaacagttgcccatacttgggatgtcctacggatttaaaagagcttggcatttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctagaaacagttgcccatacttgggatgtcctacggatttaaaagagcttggcatttca 438
Query: 245 ctgtttacaagtttgactgaagcatacatgtatatacatatgcaaacattctactaagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgtttacaagtttgactgaagcatacatgtatatacatatgcaaacattctactaagca 498
Query: 305 tgcatgtgtacatgtgcacattctaccaagcacacacatgtgcacagtttactaagcata 364
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcatgtgtacacatgcacattctaccaagcacacacatgtgcacagtttactaagcata 558
Query: 365 catatgtacacatactactgaacatatatatacatgtgcacattctaagtgtatgtctct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catatgtacacatactactgaacatatatatacatgtgcacattctaagtgtatgtctct 618
Query: 425 ctctatatatgcacattctattaaacatacatgtgtacatatgtgcacattca 477
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 ctctatatatgcacattctattaaatatacatgtgtacatatgtgcacattca 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 871
Length adjustment: 10
Effective length of query: 467
Effective length of database: 861
Effective search space: 402087
Effective search space used: 402087
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_j20.g1 MSMg01no345_j20.g1 CHROMAT_FILE:
MSMg01no345_j20.g1 PHD_FILE: MSMg01no345_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:06 2005
(439 letters)
>mm_chr3_60439418_60440260
Length = 843
Score = 603 bits (312), Expect = e-177
Identities = 401/442 (90%), Gaps = 23/442 (5%)
Strand = Plus / Minus
Query: 1 acatcttttaaattttccctgtagcctcttagatgtgcttatcttacttcaacctaca-- 58
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 434 acatcttttgaattttccctgtagcctcttagatgtgcttattttacttcaacctacaaa 375
Query: 59 -aagtgttctttgtagtaacttccttatgactgtggtttagccaccataaca-tttttta 116
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 374 gaagtgttctttgtagtaacttgcttatgactgtggtttagccaccataacattttttta 315
Query: 117 tgcctttaaaaccagttacttaagagttttactttccccatcagtgataacaactatgtt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgcctttaaaaccagttacttaagagttttactttccccatcagtgataacaactatgtt 255
Query: 177 aggtatatcagtctgggttggcagtgtgaattttttcagaacccgatatgtttctttcca 236
|||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 254 gggtatatcggtctgggttggcagtgtgatttttttcagaatccaatatgtttctttcca 195
Query: 237 aaatcaactgctattctgaagggcttgcctttttatggtatttggttctttcttgcagtg 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 194 aaatcaactgctattctgaagggcttgcctttttatggtgtttggttctttcttgcagtg 135
Query: 297 gttcttcttcttttcttcttcttttcttctgctccttctcctcctcctcctccctgtcct 356
||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct: 134 gttcttcttcttttctt--------------ctcctcctcctcttcctcctccctgtcct 89
Query: 357 ccccctcctcctcctcctcttcctcctcctccccctgctcttcctcctcctcctcctcct 416
|||||||| |||||||| ||||||||||| ||| ||| |||||| ||||| ||||||
Sbjct: 88 ccccctcc-cctcctcc---tcctcctcctcgtcctcctcctcctccccctcc-cctcct 34
Query: 417 cctcctcctcctcctcctcttc 438
||||||| ||||| ||||||||
Sbjct: 33 cctcctcttcctcatcctcttc 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 843
Length adjustment: 9
Effective length of query: 430
Effective length of database: 834
Effective search space: 358620
Effective search space used: 358620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
