BAC Information

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BAC

Clone NameMSMg01-345K07
Chromosome3 (Build37)
Map Location 116,709,852 - 116,710,220
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749
Downstream gene1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345K07.T7 (MSMg01no345_k07.b1)MSMg01-345K07.TJ (MSMg01no345_k07.g1)
ACCAG458417AG458418
length691830
length of high quality
(start - end)		373 (46 - 418)116 (72 - 187)
definitionCHROMAT_FILE: MSMg01no345_k07.b1 PHD_FILE: MSMg01no345_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:08 2005CHROMAT_FILE: MSMg01no345_k07.g1 PHD_FILE: MSMg01no345_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGTTCAGTGCTGTTCTAAATGCGCTTCTTGTTCATAGGGGTTA
GGAGCCCCTAAGCTCTCTCATTTTTGTACTCTCAACACAAAAATCTTTTT
GAGTCTTCTTGATACAACATAATTCTTTTAAAAGTTTGTGGGTTGCTAAT
GAATAGTTTACTCCACTATACAAAAGCCAAGCAGGCATGCCTTTCAAGGT
GCAACACTCCCCACTTGACTGTGATCTCCTTCAAGGCCACTGAGGAAGTC
TTTTCAGGGTCTGAGAACACATTCTCTTCAAAGGAGGGAGTTTGTGAGAC
TCAGCTTGGAGAATTTAGGCCTATTGACTAATGTTTTCCTTGGATACTCC
CTGCGTTATGTCTAAGGTTTTTGCCAAAGATCCTAAAGATTTTTCTCTCT
TCTGGATTTAGCCTTTGATTTAAAATTCATCCCTTGAATTGATACTTTTT
GGGAGAAGTAAAGACAAAGGGTTTCAACCCATCCCGGACTTTCTTCATAT
GCGGTGGGTTTTTTTTTTTCCCCTTTAACACCATTTTGTCCCGCTGGGTG
TTTTTACTTGGAAACCCCCGGAAAAAAAAAACCAGGTTGGGCATCTTTTT
ATAAACCTCCGGGCCTGGAAAATTTCTCTCTTAAGTGGGAN

CGATGCANTGNNTANCCTGGCGCGCGCCTGGCCTCAAAATATTAGGTGAA
CTATANAANGATTCGCGAAATTCTAATCCTGGTTATTATTANCATCTACT
CACCCTCCCTACTGTTATAACTAATCTATGTGGNNAATCTTATTCTTCCA
AAGCTCTATATTGCAAAAAGGCTCTTCCCTCCTCANCTCATCCCANTTGC
TTTCAAAAATGCCCATTTTTCCAAACTATCATTGGNCTCCCATGGCCCAA
AAATACCTTTCTGTCCCNNNNTAAATTGGGGNNNCACTTATTGACCNNNN
CANCAAAAATTTACTTTATCCCACCCCCAAAATTCTTTTTTTTTGANCAN
NCATNTAGGAGGGCTGGGGCGGGGGGTGGGGGGGGGGGGGGTGGGGTGGG
GGGGAGGGGAACAAAAATTTAAACATATATTTTTTTTGGTTCTAATTAAT
TTTTTTATATAAAATAAACAAAAAACACTNNNCCNNNNTNTNNTTTCCCT
CTTANNCTCTTCCCCCTCCCCCCCCCCTCCCCCTCCAATANATTATAAAA
AAAGTAGAGGGTACAGGAGGGGGGGGGGGGCCNCNNNNNNCNNTTAAAAC
TTATATAACTATATCTTAATATAACCCGCTGNNTCTTTTTCTTTCCTTTT
TCACTCCCCTCCACCCTTCCCNCTAATACCCCCCCCCTCTTTCCCCCCCT
CNCCCTCTATACATTATTTTTCTTTCTTTATTTCCCCCCCCACTCTCCCC
CCTCCCTCTCCTCTCTTCCTCCCCCACCCCCCCTCCTCCTTTATTCTCCT
ATCTTTTTATTCCTACTATGGTGATCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_k07.b1 MSMg01no345_k07.b1 CHROMAT_FILE:
MSMg01no345_k07.b1 PHD_FILE: MSMg01no345_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:08 2005
         (373 letters)



>mm_chr3_116709648_116710420
          Length = 773

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagttcagtgctgttctaaatgcgcttcttgttcataggggttaggagcccct 64
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagttcagtgatgttctaaatgtgcttcttgttcataggggttaggagcccct 264

                                                                       
Query: 65  aagctctctcatttttgtactctcaacacaaaaatctttttgagtcttcttgatacaaca 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 aagctctctcatttttgtactctcaatacaaaaatctttttgagtcttcttgatacaaca 324

                                                                       
Query: 125 taattcttttaaaagtttgtgggttgctaatgaatagtttactccactatacaaaagcca 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 taattcttttaaaagtttgtgggttgctaatgaatagtttactccattatacaaaagcca 384

                                                                       
Query: 185 agcaggcatgcctttcaaggtgcaacactccccacttgactgtgatctccttcaaggcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcaggcatgcctttcaaggtgcaacactccccacttgactgtgatctccttcaaggcca 444

                                                                       
Query: 245 ctgaggaagtcttttcagggtctgagaacacattctcttcaaaggagggagtttgtgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaggaagtcttttcagggtctgagaacacattctcttcaaaggagggagtttgtgaga 504

                                                                       
Query: 305 ctcagcttggagaatttaggcctattgactaatgttttccttggatactccctgcgttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcagcttggagaatttaggcctattgactaatgttttccttggatactccctgcgttat 564

                    
Query: 365 gtctaaggt 373
           |||||||||
Sbjct: 565 gtctaaggt 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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