Query= MSMg01no345_k16.b1 MSMg01no345_k16.b1 CHROMAT_FILE:
MSMg01no345_k16.b1 PHD_FILE: MSMg01no345_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:10 2005
(498 letters)
>mm_chr3_76488461_76489359
Length = 899
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 5 gaattctctttgctcttacaa-atcttgcttgtcttgtttctgacccacactttgtaaga 63
|||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctctttgctcttagaacatcttgcttgtcttgtttctgacccatactttgtaaga 264
Query: 64 tgtggttttatttcctgagaaagactttcatattctccaagattatctggtagttttatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 tgtggttttatttcctgagaaagactttcatattctccaagattatctggtagttttctg 324
Query: 124 tcaacttgaccaaaacaaaagtcatttcagaggaggagacctcagttgggaaaaatggct 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaacttgaccaaaacgaaagtcatttcagaggaggagacctcagttgggaaaaatggct 384
Query: 184 ccataagatctggctgtgggccattctgtagggcatttttatattggtgattgataacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccataagatctggctgtgggccattctgtagggcatttttatattggtgattgataacca 444
Query: 244 agagtacagctcattgtggttggtgctatcactaggctgatagtcctggaatctagaaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagtacagctcattgtggttggtgctatcactaggctgatagtcctggaatctagaaaa 504
Query: 304 tgataactggcctgcctttatgaacacaccagtgaatatccttcctccatggctcttgca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgataactggcctgcctttatgaacacaccagtgaatatccttcctccatggctcttgca 564
Query: 364 tcagctcctgccatgtttgagttcttgtccttacttcctttgaagatgaacaatgatgca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagctcctgccatgtttgagttcttgtccttacttcctttgaagatgaacaatgatgca 624
Query: 424 gaaaaggaggctgaagtaaactctttctccactaagttgctttgatcatagtgtttcacc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaaaggaggctgaagtaaactctttctccactaagttgctttgatcatagtgtttcacc 684
Query: 484 acagcagtactaact 498
|||||||||||||||
Sbjct: 685 acagcagtactaact 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_k16.g1 MSMg01no345_k16.g1 CHROMAT_FILE:
MSMg01no345_k16.g1 PHD_FILE: MSMg01no345_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:10 2005
(602 letters)
>mm_chr3_76639860_76640861
Length = 1002
Score = 638 bits (330), Expect = 0.0
Identities = 339/342 (99%)
Strand = Plus / Minus
Query: 261 agcctgctttcttatagaactctggaataccagcccaaggatggcaacacccataatgag 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 agcctgctttcttatagaactctggaataccagcccaaggatggcaacacccataatgag 943
Query: 321 ctgggtcctcacccataaatcactaagaaaatgccagataggcttacctacagcctgatc 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ctgggtcctcacccataaatcactaagaaaatgccagataggcttacctacagcctgatc 883
Query: 381 ttctgaaggtattttcttaattgaggctccctcccctctgctgactccagcttgtgttaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 882 ttctgaaggtattttcttaattgaggctccctcccctctgctgactccagcttgtgtcaa 823
Query: 441 gttggtgtaagagtagccagggtactttctaatagttaccatactcctggtatccattca 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gttggtgtaagagtagccagggtactttctaatagttaccatactcctggtatccattca 763
Query: 501 catcagtgtaactctcatcaagactgaaacctatactaaaaggcagtgtcttaaacaaat 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 catcagtgtaactctcatcaagactgaaacctatactaaaaggcagtgtcttaaacaaat 703
Query: 561 atctcaatcatctcatttagttacagaaaacttgtactgttt 602
||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 702 atctcaatcatctcatttagttacagaaaacatgtagtgttt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
