BAC Information

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BAC

Clone NameMSMg01-345L01
Chromosome3 (Build37)
Map Location 106,321,779 - 106,322,324
singlet/doubletsinglet
Overlap geneCept1
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d
Downstream geneTmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345L01.T7 (MSMg01no345_l01.b1)MSMg01-345L01.TJ (MSMg01no345_l01.g1)
ACCAG458453AG458454
length748739
length of high quality
(start - end)		550 (56 - 605)550 (85 - 634)
definitionCHROMAT_FILE: MSMg01no345_l01.b1 PHD_FILE: MSMg01no345_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:12 2005CHROMAT_FILE: MSMg01no345_l01.g1 PHD_FILE: MSMg01no345_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAAACCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCCATGTCCCAAGGATATTTTGTCTCCACGAGTAT
CCTTGCTGTTGCTGAGTAACTGGGTTTAGAATGCTGTAATGCGCTTTTCA
GAAAAATACTCTGCTGACAAAGTGGAAGAAAGGCAATGCAGCCTTGACAG
TCAGAGTGACTTGTCAGCTTTTCATATGAACAAATGAAACATTCTTGAAT
GACAAAATAAGATGAATGTAAGTTCTAGCCCTGCTTGTAAACTTTCCTGT
TATAGTTTAAGGGGTTCTGGATTCCCTGACCAGGGAAACATTTCCTAAAA
GTCACAATGTCAAAACTACAATTCTAAAGTGAGAGGGGGGAAAAACAGTA
TATTAGCAGTTAGAACTTCATTAGGGAAATATACATTGGAGAAAAAAGGA
GAAAGTGAAGGCATTCAAAGGATGGCTATAGTAACAAAAGGGCTAAGGGG
AATTTCAAAAATCACAAGTAAGAGAGGAAAACATTAGAAGAAACAGAATT
GAGACTATAAGAGTCTAGCTTCTAGCTGTGGAGTTATTTTGTTTGTTTTG
CTTTGTTTACNCTAAGATTATTGTGAATCCAAGCAGAACTACAGTAGTGA
AAGGACATGCTTAGATGTTAAGAAAGAAAGCCAAATGTTTCCTTAATGGA
GGTCACTCCATTATGGGAAAAACAAAACTCTGCTTGTTGGTTCCAAAA

NNNNTTTTCGATGCGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCTGAGAAGCACCTGAAAAAATGTTTAGCATCCTTAATCATCAGG
GAAGTGCATATTAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAAT
GGCTAAGATCAAAATTTCAAGTGACATCAGATGCTGGCAAGGATGTGGAG
AAAGAGGAACACTCCTCCAGTGTTGGTGGAATTGCAAGCTTGTCCAACCA
CTCTGGAAATCAGTTTGGCATTTCCTCAGAAAATTGGACATAGTACTACT
GGAGGGTCACACAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAA
CCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGACTTATTTATA
ATAGCCAGAAGTTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACGTGGAGGGCATC
ATCCTGAGTGAGGGAACCAATCACAAAGGAACTCACACAATATGTACTCA
CTGATAAATGGATATTAGCCCAGAAATTTATGATACCCAAGATATAGGAT
ACAATTTGCTGAATGCTTGAAACTCAAGAAGAATAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_l01.b1 MSMg01no345_l01.b1 CHROMAT_FILE:
MSMg01no345_l01.b1 PHD_FILE: MSMg01no345_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:12 2005
         (550 letters)



>mm_chr3_106321575_106322524
          Length = 950

 Score = 1048 bits (542), Expect = 0.0
 Identities = 545/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatgtcccaaggatattttgtctccacgagtatccttgctgttgctgagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatgtcccaaggatattttgtctccacgagtatccttgctgttgctgagtaa 264

                                                                       
Query: 65  ctgggtttagaatgctgtaatgcgcttttcagaaaaatactctgctgacaaagtggaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggtttagaatgctgtaatgcgcttttcagaaaaatactctgctgacaaagtggaaga 324

                                                                       
Query: 125 aaggcaatgcagccttgacagtcagagtgacttgtcagcttttcatatgaacaaatgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggcaatgcagccttgacagtcagagtgacttgtcagcttttcatatgaacaaatgaaa 384

                                                                       
Query: 185 cattcttgaatgacaaaataagatgaatgtaagttctagccctgcttgtaaactttcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattcttgaatgacaaaataagatgaatgtaagttctagccctgcttgtaaactttcctg 444

                                                                       
Query: 245 ttatagtttaaggggttctggattccctgaccagggaaacatttcctaaaagtcacaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatagtttaaggggttctggattccctgaccagggaaacatttcctaaaagtcacaatg 504

                                                                       
Query: 305 tcaaaactacaattctaaagtgagaggggggaaaaacagtatattagcagttagaacttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaaaactacaattctaaagtgagaggggggaaaaacagtatattagcagttagaacttc 564

                                                                       
Query: 365 attagggaaatatacattggagaaaaaaggagaaagtgaaggcattcaaaggatggctat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attagggaaatatacattggagaaaaaaggagaaagtgaaggcattcaaaggatggctat 624

                                                                       
Query: 425 agtaacaaaagggctaaggggaatttcaaaaatcacaagtaagagaggaaaacattagaa 484
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 agtaacaaaagggctaaggggaatttcaaaaatcacaagtgagagaggaaaacattagaa 684

                                                                       
Query: 485 gaaacagaattgagactataagagtctagcttctagctgtggagttattttgtttgtttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaacagaattgagactataagagtctagcttctagctgtggagttattttgtttgtttt 744

                 
Query: 545 gctttg 550
           ||||||
Sbjct: 745 gctttg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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