Query= MSMg01no345_l19.b1 MSMg01no345_l19.b1 CHROMAT_FILE:
MSMg01no345_l19.b1 PHD_FILE: MSMg01no345_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:15 2005
(496 letters)
>mm_chr3_56526448_56527343
Length = 896
Score = 913 bits (472), Expect = 0.0
Identities = 487/492 (98%)
Strand = Plus / Minus
Query: 5 gaattccacaaaatgaagtattattatagattatcatcttaaacccacaaacccaaatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaattccacaaaatgaagtattattatagattatcatcttaaacccacaaacccaaatag 637
Query: 65 gaccaatgtgaacattctccttccatataacatctgttttcgttgaattacccaagctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaccaatgtgaacattctccttccatataacatctgttttcgttgaattacccaagctgc 577
Query: 125 tgttcataatagaaatgcttttaatgtaggtggaacagcttctgccattactttcctatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 576 tgttcataatagaaatgcttttaatgtaggtggaacagcttctgccattactttcttatt 517
Query: 185 ttctaacttgtttaatttatggactaactgcattaatgtgtttggaatttctcattggct 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 516 ttctaacttgtttaatttatggactaactgcattactgtgtttggaatttctcattggct 457
Query: 245 tctcatgaaggaggaaaacccagcatccacagtagcacatgacctgtgtccaaactggat 304
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 456 tctcataaaggaggaaaacccagcatccacagcagcacatgacctgtgtccaaactggat 397
Query: 305 ctgacagaaggtgaagaaaaagcaagatcctcactgtcttatacttaatgaaatacagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgacagaaggtgaagaaaaagcaagatcctcactgtcttatacttaatgaaatacagaa 337
Query: 365 gtgttctgggtgctgtggaaatctctaagataaaaaccaagcaggtatcaggaaagggag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtgttctgggtgctgtggaaatctctaagataaaaaccaagcaggtatcaggaaagggag 277
Query: 425 ttttgataagagtctgtgggccactttatactctctatatgttatattcatcttacaatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 ttttgataagagtctgtgggccactttatactctctatatgttatattcattttacaatt 217
Query: 485 tataatttctag 496
||||||||||||
Sbjct: 216 tataatttctag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_l19.g1 MSMg01no345_l19.g1 CHROMAT_FILE:
MSMg01no345_l19.g1 PHD_FILE: MSMg01no345_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:15 2005
(573 letters)
>mm_chr3_56482357_56483332
Length = 976
Score = 1052 bits (544), Expect = 0.0
Identities = 567/576 (98%), Gaps = 3/576 (0%)
Strand = Plus / Plus
Query: 1 tggaggttagcaacttgagtgaggtatacagtctgctaatttccatagttgttcaaaata 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaggttaacaacttgagtgaggtatacagtctgctaatttccatagttgttcaaaata 260
Query: 61 aaatatcacaatgagagcacttgtgagtatgcagtgagccttctgaaaaatcagtggctt 120
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 261 aaatatcacaatgagagcacttgtgagcatgcagtgagccttctgaaaagtcagtggctt 320
Query: 121 tgagtctctctcttttttttttttttttttt---gaggattttatatggtgagtttcctc 177
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tgagtgtctctcttttttttttttttttttttttgaggattttatatggtgagtttcctc 380
Query: 178 taaggcaccacctttccccagtgtgtctaatttttttgctagtatactatccaatatatc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggcaccacctttccccagtgtgtctaatttttttgctagtatactatccaatatatc 440
Query: 238 taatttactgcagatttgtgaaggcagctctctgctttgttttagctcttcattgcactt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatttactgcagatttgtgaaggcagctctctgctttgttttagctcttcattgcactt 500
Query: 298 taaagaagtaatctagctgaggaaaattggaaagaccctgttgaaaatattttaggtagt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagaagtaatctagctgaggaaaattggaaagaccctgttgaaaatattttaggtagt 560
Query: 358 cctggcttctaatagctgagattcattttgctgttatgagttgagaatctctacaggagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggcttctaatagctgagattcattttgctgttatgagttgagaatctctacaggagg 620
Query: 418 tcattttggtaaattatttttcagttctcagattcatcacatgcattcattaataaggta 477
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcattttggtaaatgatttttcagttctcagattcatcacatgcattcattaataaggtg 680
Query: 478 aggacatgcctatagggaaaacccatgtctttgattggaaagaaggatataggggaaaga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggacatgcctatagggaaaacccatgtctttgattggaaagaaggatataggggaaaga 740
Query: 538 gtctgtattgaattatgacttcaaaaatacggctca 573
||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtctgtattgaattatgacttcaaaaatacggctca 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 976
Length adjustment: 10
Effective length of query: 563
Effective length of database: 966
Effective search space: 543858
Effective search space used: 543858
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
