BAC Information

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BAC

Clone NameMSMg01-345M19
Chromosome3 (Build37)
Map Location 57,028,061 - 57,209,582
singlet/doubletdoublet
Overlap geneTm4sf1, LOC383862
Upstream geneLOC100040139, LOC666585
Downstream geneTm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345M19.T7 (MSMg01no345_m19.b1)MSMg01-345M19.TJ (MSMg01no345_m19.g1)
ACCAG458537AG458538
length741719
length of high quality
(start - end)		505 (37 - 541)474 (56 - 529)
definitionCHROMAT_FILE: MSMg01no345_m19.b1 PHD_FILE: MSMg01no345_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:20 2005CHROMAT_FILE: MSMg01no345_m19.g1 PHD_FILE: MSMg01no345_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,028,061 - 57,028,557)(57,209,109 - 57,209,582)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCC
TCCTGGGCTGAGAAAAGAGAAATATTCCCGTATTGATGAGCATCTGGATT
ATGGCACCATCCTATACCATTATATAAACCATCAATAAAATAGGCAGCTG
CCTGTAATATGGGGAAAGATTAGAAAATTTTTATAATCACAAATTTGGTT
CATATGAGAAGATCTCGGAGTTTGACAGTTAGATAATGATTTTCTATTCT
AAGCTAGTAATCTGCAAATGAAAATTGATAATCCATGGAGTTTGGTAATG
CTCTTATAACCTCATTTTCAAGGGTAATAAAATATAGTAAGAGTTAAATC
CATATAATTGTTGCTATCGGTCCCTCCCTTAATTTGCTAATTGAGCAAGC
AGTATTTATGACCCCTACGAGGTAAATAAGTCCATTTTGAAGCTTCATCG
TCCTCTGCTATATCTGCAGAAGACAGCTGAGTGCTGTGGTTCTTAGCCCT
CCCAGTCCTGTCACCCTTTAAACACCTACAGTTCCTCCTGTTAGGATGAC
CTCCGAACATAAAATTGTTTTCATTGCTACTTCACACCTGTTAACTTTGC
TACTTTTATGAATTATAATATAAATATCTGTTCTTTCCCAACAATTGTCT
TATATGCTCCCCCCATGAAAGTTATTCACCTCTTCCAGAGGAACAACCTA
AAATTTAAAACAACTGTTTTATGGGGGGGAAAATTTAAGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATTTATAGTTTTCTTTATTATTGGAACTTCCTTTCCACTTTTTA
TTTTATTTACTTGTATGTCCCGTAGTCCCATTAATTAATTAGCTAATTAA
TTAAACAAATACTTGTTGGGTGTTACTTCTGAGCAAATTAGTGTTGGCTT
GCAGGCATAGTGCATGTTGTCTTGGGACTGAATTAGGGAGAATAGGCAAA
CAAAGAAAATAGAGATAATAAAGCCAATAAAAGAACCAGACAGCATAGGA
AGAAAATGAATGCAGATGGATGGAGAGGTCTGTAAGAATTTCCTTCACTA
CATATTTGGGGACACTGAGGATGAGATCTGAGGGTGAGAAGGGAACCCCT
GTTCTAAGGGGTAAGGGAGAGTACGCAAGGACCCTTTGGTGGGAATAAGC
CGTGCACCAGAGGCTAGAGGGTAAGGATCTAAGGCTTTAGGGAACTGGCA
GATACCTGATGCTACTCCACCTTTTCCAAGTGTTCTGTCTGGTTGGGTCT
CCCCAGCACATCTAGCACTAGCCTCCAAAGTAACAATGAACCCTACTCGC
CAGGCCTATCACAACTCCCATGTTCCAGGGCACCCCATCCTAATGTGGCT
CAGTTTTGACCCCCCCCATTCCTTTTTTCATTATTTTTCCCCTAACCATC
TCTTTGAATCGCGTGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_m19.b1 MSMg01no345_m19.b1 CHROMAT_FILE:
MSMg01no345_m19.b1 PHD_FILE: MSMg01no345_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:20 2005
         (505 letters)



>mm_chr3_57027857_57028761
          Length = 905

 Score =  899 bits (465), Expect = 0.0
 Identities = 489/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcctcctgggctgagaaaagagaaatattcccgtattgatgagcatctggatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcctcctgggctgagaaaagagaaatattcccgtattgatgagcatctggatt 264

                                                                       
Query: 65  atggcaccatcctataccattatataaaccatcaataaaataggcagctgcctgtaatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 atggcaccatcctataccattatataaaccatcaataaaataggcagctgcctttaatat 324

                                                                       
Query: 125 ggggaaagattagaaaatttttataatcacaaatttggttcatatgagaagatctcggag 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 ggggaaagattggaaaatttttataatcacaaatttggttcatatgagaagatcttggag 384

                                                                       
Query: 185 tttgacagttagataatgattttctattctaagctagtaatctgcaaatgaaaattgata 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgacagctagataatgattttctattctaagctagtaatctgcaaatgaaaattgata 444

                                                                       
Query: 245 atccatggagtttggtaatgctcttataacctcattttcaagggtaataaaatatagtaa 304
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 atccatggagattggtaatgctcttataacctcgttttcaagggtaataaaatatagtaa 504

                                                                       
Query: 305 gagttaaatccatataattgttgctatcggtccctcccttaatttgctaattgagcaagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagttaaatccatataattgttgctatcggtccctcccttaatttgctaattgagcaagc 564

                                                                       
Query: 365 agtatttatgacccctacgaggtaaataagtccattttgaagcttcatcgtcctctgcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtatttatgacccctacgaggtaaataagtccattttgaagcttcatcgtcctctgcta 624

                                                                       
Query: 425 tatctgcagaagacagctgagtgctgtggttcttagccctcccagtcctgtcacccttta 484
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 tatctgcagaagacagttgagtgctgtggttcttagccttcccagtcctgtcacccttta 684

                            
Query: 485 aacacctacagttcctc 501
           |||||||||||||||||
Sbjct: 685 aacacctacagttcctc 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_m19.g1 MSMg01no345_m19.g1 CHROMAT_FILE:
MSMg01no345_m19.g1 PHD_FILE: MSMg01no345_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:20 2005
         (474 letters)



>mm_chr3_57208810_57209683
          Length = 874

 Score =  808 bits (418), Expect = 0.0
 Identities = 460/474 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttatagttttctttattattggaacttcctttccactttttattttatttacttgta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 773 aatttatagttttctttattattggaacttcctttccacttttaattttatttgcttgta 714

                                                                       
Query: 61  tgtcccgtagtcccattaattaattagctaattaattaaacaaatacttgttgggtgtta 120
           |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgtcccatactctcattaattaattagctaattaattaaacaaatacttgttgggtgtta 654

                                                                       
Query: 121 cttctgagcaaattagtgttggcttgcaggcatagtgcatgttgtcttgggactgaatta 180
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 653 cttctgagcaaattagtgttgtcttgcaggcatagtgcaggttgtcttgggactgaatta 594

                                                                       
Query: 181 gggagaataggcaaacaaagaaaatagagataataaagccaataaaagaaccagacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gggagaataggcaaacaaagaaaatagagataataaagccaataaaagaaccagacagca 534

                                                                       
Query: 241 taggaagaaaatgaatgcagatggatggagaggtctgtaagaatttccttcactacatat 300
           |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct: 533 taggaagaaaatgaatgcaggtagatggagaggtctgtaagaatttgcttcactacatat 474

                                                                       
Query: 301 ttggggacactgaggatgagatctgagggtgagaagggaacccctgttctaaggggtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttggggacactgaggatgagatctgagggtgagaagggaacccctgttctaaggggtaag 414

                                                                       
Query: 361 ggagagtacgcaaggaccctttggtgggaataagccgtgcaccagaggctagagggtaag 420
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| 
Sbjct: 413 ggagagtacgcaaggaccctctggtgggaataagccgtgcaccagagtctagagggtaaa 354

                                                                 
Query: 421 gatctaaggctttagggaactggcagatacctgatgctactccaccttttccaa 474
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gatctaaggctttagagaactggcagatacctgatgctactccaccttttccaa 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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