BAC Information

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BAC

Clone NameMSMg01-345P05
Chromosome3 (Build37)
Map Location 84,040,007 - 84,040,246
singlet/doubletsinglet
Overlap genenone
Upstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345P05.T7 (MSMg01no345_p05.b1)MSMg01-345P05.TJ (MSMg01no345_p05.g1)
ACCAG458652AG458653
length799828
length of high quality
(start - end)
276 (53 - 328)240 (86 - 325)
definitionCHROMAT_FILE: MSMg01no345_p05.b1 PHD_FILE: MSMg01no345_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:31 2005CHROMAT_FILE: MSMg01no345_p05.g1 PHD_FILE: MSMg01no345_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGCTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACGCCTATTCCCTGACCATCTTGGGGCGTAGTAATGGG
GTGATGAGCAAGCAACTAATCAGGTGCTGTCACGCCACATCAGGTGCTGA
AACGTCATGCTGCAGGCTATATAAGCAGCGCCATTTTCCGGGTTTGGGGT
CTTCCTCCTGAGTAGTAAGCAATAAAGCTTTTGCCGCAGAAGATTCCGGT
TGTCCCGAGTGTGTTCTTGCCAGCAGGGACAAAAGCTCGGGATAAAGAAA
GGGTTTATTCAGCGTACACTTTCCACATTTCTTTTTATCACCAAAATAAG
TCAGGACTGGAATTCAAGCATGTCATCACCCAGCTCCCCTCTATGGCATC
TGCCTCATATCCTGCTTCCTAGCCCCCCCCCTGCGCTTATTCACATTCAC
TAACTCTATTTCTCCCTCTTAATAAATATTCTCTATATTTCAAAATGCCT
TGTTTAACATCTTATCTTAAATCTTATTAACCAGCTAACTTTTTTCTTTT
TATCATTAATATTATCCATACCTTTTCCTATCCGTTTTCCATTCTCCTCT
ATTCCCTTTATCTCTTCTAATACATTCATATTTTTCTTACTTCCTTTCTT
ACTTCATATTCCTTGCTTTTTTATATTCCTGTCAACCTTATATTTCTTTT
AATATCATCCAACTACCCTCATTCCTTTTTTTTTATAATATCATGATTAA
TTGCCTTAGTATAAACTTCCGTATCCAACTGTAGCCATATATCGTTCTG
TTTCTCGATGATACTGGGTAGGCCGGGCGGGCGCCGGGCTGCAAAAAGGG
GGTGACACTATAGAAGTGTTTCCAGAAAATCTGCCTGCCTCTGCCTCCCA
AGTGCTGGGATTAAAGGCATGTGCCACCACCACCCAGCCAAATAATTTTT
TAAAGAGAAAGTTTAAAAGCGAACAAGTAGAATGGATGACTGAGTTGTAA
CTTAGGGTAAAGCGCATACCAAGGCCTGAATCTGAGCACTGGCACCCTAC
CATCCCACCCCTGCCCAAATGCTGCAGCCTGATCAGAATGAGAAAGGGAG
AGCCAGATGCCCGACAAAACCATGCCAATCTTCATTTCTGTGTTCTTATC
ACTTTCAATCTGTTTACCCTGCTTTCAAACAACGGCTTCAGCAATTGAGT
TATGCCCCCCCCACTCATTATTTTTATCCCTACTCACACTTATCTATTTT
CCCACTTCTTACAGAACTCCTATTTTCCCATACTCTCTTTTCCTTTTACC
ACCCCAATGCACTTCACCCTAATACCTCCTACACACTCGTTTTTTTTTTC
TTTCTCTTTTTCCGCCACCCTCTTAACTACATATCCTTGTCATCACGTCC
TACTCTCTATTGTTTCTGCATTTTCTAGCATAAGCTTCTCTTTTTTACTA
TCTTTTTCACTTTTTTTGAGAATTATGTTCTTTTCCTTACTAATAATCGA
ACTCGAGTAGAAACACATGGTGCATATATTCTTTTTATTTTCTATCACTA
TCTATATCTCAAACTTCGAAAATTTGTATTTATTATAAATCCGATTTATT
TCTTTCCCTCTCTCCCTTCATTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_p05.g1 MSMg01no345_p05.g1 CHROMAT_FILE:
MSMg01no345_p05.g1 PHD_FILE: MSMg01no345_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:31 2005
         (240 letters)



>mm_chr3_84039754_84040393
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctctgcctcccaagtgctgggattaaaggcatgtgccaccaccacccagccaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgcctctgcctcccaagtgctgggattaaaggcatgtgccaccaccacccagccaaataa 434

                                                                       
Query: 61  ttttttaaagagaaagtttaaaagcgaacaagtagaatggatgactgagttgtaacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttttttaaagagaaagtttaaaagcgaacaagtagaatggatgactgagttgtaacttag 374

                                                                       
Query: 121 ggtaaagcgcataccaaggcctgaatctgagcactggcaccctaccatcccacccctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggtaaagcgcataccaaggcctgaatctgagcactggcaccctaccatcccacccctgcc 314

                                                                       
Query: 181 caaatgctgcagcctgatcagaatgagaaagggagagccagatgcccgacaaaaccatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaatgctgcagcctgatcagaatgagaaagggagagccagatgcccgacaaaaccatgc 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)