Query= MSMg01no346_g13.b1 MSMg01no346_g13.b1 CHROMAT_FILE:
MSMg01no346_g13.b1 PHD_FILE: MSMg01no346_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:06 2005
(611 letters)
>mm_chr3_95891009_95892013
Length = 1005
Score = 1033 bits (534), Expect = 0.0
Identities = 594/634 (93%), Gaps = 33/634 (5%)
Strand = Plus / Minus
Query: 5 gaattcctgatattcaagactttgtgctttcattcataagaaaggatggcctgtaataat 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattcctgatatttaagactttgtgctttcattcataagaaaggatggcctgtaataat 595
Query: 65 ctttttgggtgctattttgtgcagtttgagaattctgttttcatcaggttgtaaactgac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctttttgggtgctattttgtgcagtttgagaattctgttttcatcaggttgtaaactgac 535
Query: 125 cctgagagttctttttcttttctggactaagtcatacttatttctctgtctcaattttag 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 534 cctgagagttctttttcttttctgggctaagtcatacttatttctctgtctcaattttag 475
Query: 185 agtataaactgtatgaaggtaggaactgtctcattaattgatctctgagctgtaagactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agtataaactgtatgaaggtaggaactgtctcattaattgatctctgagctgtaagactt 415
Query: 245 gacaggaagtaaagaatataggatcatctgggcgtggccaggcctgggatcccagaaatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 414 gacaggaagtaaagaatataggatcatctgggcgtggccaggcctgggatcccagaagtc 355
Query: 305 agagtcatcatgagtcatgttggtatacactgaagacttcagggcagtcagggctgatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agagtcatcatgagtcatgttggtatacactgaagacttcagggcagtcagggctgatga 295
Query: 365 gactctacctccccacccacccctccactatcgaatattagataaacagctctctctctc 424
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 294 gactctacctccccacccacccctccactttcgaatattagataaacagctctc-c---- 240
Query: 425 tctctctacttcaacttttctttctttttttttttt------------------------ 460
|||||||||||||||||||||||||||||||||||
Sbjct: 239 -ctctctacttcaacttttctttcttttttttttttttttttttctttcttttttttttt 181
Query: 461 ---agaaatcaaattgctttattttctctaaatccctccaagcccaggaaaaaggagtca 517
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tttagaaatcaaattgttttattttctctaaatccctccaagcccaggaaaaaggagtca 121
Query: 518 gctgtggggatcacttcactaagcggttcaagtatgagcaacctccaaacttgtcaccat 577
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 120 gccgtggggatcacttcactaagcagttcaagtatgagcaacctccaaacttgtcaccat 61
Query: 578 catagcttagtgatgcccccggaggggcagcagc 611
||||||||||||||||||||||||||||||||||
Sbjct: 60 catagcttagtgatgcccccggaggggcagcagc 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1005
Length adjustment: 10
Effective length of query: 601
Effective length of database: 995
Effective search space: 597995
Effective search space used: 597995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_g13.g1 MSMg01no346_g13.g1 CHROMAT_FILE:
MSMg01no346_g13.g1 PHD_FILE: MSMg01no346_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:06 2005
(642 letters)
>mm_chr3_95750648_95751689
Length = 1042
Score = 1226 bits (634), Expect = 0.0
Identities = 640/642 (99%)
Strand = Plus / Plus
Query: 1 tctttgcaaactatgccaggttcaaaataaatgcttatttttaaaaatgaaatctatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgcaaactatgccaggttcaaaataaatgcttatttttaaaaatgaaatctatata 260
Query: 61 ttgactttttatcaatcatctattgtgcaatcaaaattagagttcttgagtttaaaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgactttttatcaatcatctattgtgcaatcaaaattagagttcttgagtttaaaaaca 320
Query: 121 acgcatagggcctccagataactattaagacttatttagcttagtgggtggtattttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcatagggcctccagataactattaagacttatttagcttagtgggtggtattttcat 380
Query: 181 gcaaataagcaagggtgggttttctattctgtagaagttctgggttctgttctaaccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaataagcaagggtgggttttctattctgtagaagttctgggttctgttctaaccctc 440
Query: 241 tctgtactgtgcgtgtgtataccatatgtgaagtccttagagactttgaggttgattgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtactgtgcgtgtgtataccatatgtgaagtccttagagactttgaggttgattgat 500
Query: 301 acttttgtgcagctgtgctttgactaacgccatcacagtgttaaacacgaggacgggcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttttgtgcagctgtgctttgactaacgccatcacagtgttaaacacgaggacgggcag 560
Query: 361 cgctgatcatggggttctgactattttggtttttttcccttactgctgtaacttaagttt 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 cgctgatcatggggttctgactattttgttttttttcccttactgctgtaacttaagttt 620
Query: 421 ttgaaactgcattgctttgaataaattgaagcgttattaataatgactagcttcagtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaaactgcattgctttgaataaattgaagcgttattaataatgactagcttcagtgtg 680
Query: 481 tgattgttcactcttcagaattaccatctactgtttcaaaggtctttagaaacagaaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgattgttcactcttcagaattaccatctactgtttcaaaggtctttagaaacagaaatg 740
Query: 541 acttttgaagggtagtcagacttgtgacaataataggtactagaaaactcatactccaac 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 acttttgaagggtagtcagacttgtgacaataataggcactagaaaactcatactccaac 800
Query: 601 agcagtggtggtacacacctctaatcccagcacctggaggca 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcagtggtggtacacacctctaatcccagcacctggaggca 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
