XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTACCTCTGTACCCCATTTTTTAATGGGGTTATTTGAATTTCTGGAGTT
CAGCTTCTTGAGCGCTTTGTATATATTGGATATTAATCCCCTATCAGTTA
TAGGATTGGTAAAAATTATTTCTGAATCTCTTGGTGGCCTTTTTGACTTA
TTGACAGTGTCTTTTGCTTTAAAGAAGCTTTGCAATTTTGTGGGGTCTTA
TTTGTCAATTCTTGATCTTAGAGCACAAGCCTGTTGTGTTTAGGAATTTT
TGCTCTGTACCCATATCTTCGAGGCTTTTTCCCACTTGCTTCTCTATAAA
TGTCAGTGTCTCTTGTTTTATGTGGCGTTCTTTGATCTACTTGGGCTTAA
GTTTTGTACATGGAGATAAGAATGGATCAGTTCACATTCTTGTACATGAT
AACCGCCAGTTGTGCCAACATCATTTGTTAAAAATGCTGTCTTTTTTCCA
CTTGTTGGTTTTAGCTCCCTTGTCACAGATCATGTGAGCATAAGTGTGTG
GTATTCATTCTGCTGTTGAGAGATACCTGTGTTCTTTCCAGCTTCTGGCT
ATTATAAATAAGGCTGCTATGAACATAGTGGAATATGTGTTCTTATTACA
AGTTGGAGTATCTTCTGGGGATATGCACAGGAGTGGTATTGCTGGATCTT
CCAGTAATAATATGTTCAATTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGAAAAACAATATTAAGGCATATTAAAAATACT
TTGTCACAAGGTAGAAGAAAATAAAGACATGAGAAAAAATATAGGACCCC
ACAGAGAATGTATTAAAATAAAATATATATTTAAAAATTAATTTGTTTTC
ATATACCGATAAATTAGAAAATATGTGTAAAATACATTTTGGGAAAATAC
TTTTAAAAAACATGATGGGCCAGGAGTGGTGACACATGCCTTTAATCTCA
GCACTTGTGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGG
TCTACACAGTGAGTTCCAGGACAGTCAAGTCTATACAGAGAAAGCCTGTC
TCAGAAAACAAACAAACAAACAAACAAAAACATGATGAGAAATACAAATC
TATATGGTTTTTATAACTATATAGATAGACTTTTTAAATTTATGAAGTAT
TTTACCAGAATAGCAATAAAGTTCTTGAAAGATTTAGATATATTATGTCT
ATCATATGTTTTAAATAAATATGCAGAAAGAGAATATCATTCTATTTTGA
TTTTGCACATACTACTCAAAATTATTCACTGAGAGTATATTAAAATCATT
AATATAATGATGCTTGAATGATAGCTCATCAGTTAAAAAAGCATATTCTA
TCTTTGAAGAGGACTCAAGTTTGGATTACAGN

Query= MSMg01no346_k03.g1 MSMg01no346_k03.g1 CHROMAT_FILE:
MSMg01no346_k03.g1 PHD_FILE: MSMg01no346_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:23 2005
         (645 letters)



>mm_chr3_11473309_11474353
          Length = 1045

 Score =  903 bits (467), Expect = 0.0
 Identities = 479/483 (99%)
 Strand = Plus / Minus

                                                                        
Query: 163  aaaatacattttgggaaaatacttttaaaaaacatgatgggccaggagtggtgacacatg 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 aaaatacattttgggaaaatacttttaaaaaacatgatgggccaggagtggtgacacatg 986

                                                                        
Query: 223  cctttaatctcagcacttgtgaggcagaggcaggaggatttctgagttcgaggccagcct 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  cctttaatctcagcacttgtgaggcagaggcaggaggatttctgagttcgaggccagcct 926

                                                                        
Query: 283  ggtctacacagtgagttccaggacagtcaagtctatacagagaaagcctgtctcagaaaa 342
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 925  ggtctacacagtgagttccaggacagtaaagtctatacagagaaagcctgtctcagaaaa 866

                                                                        
Query: 343  caaacaaacaaacaaacaaaaacatgatgagaaatacaaatctatatggtttttataact 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  caaacaaacaaacaaacaaaaacatgatgagaaatacaaatctatatggtttttataact 806

                                                                        
Query: 403  atatagatagactttttaaatttatgaagtattttaccagaatagcaataaagttcttga 462
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805  atatagatatactttttaaatttatgaagtattttaccagaatagcaataaagttcttga 746

                                                                        
Query: 463  aagatttagatatattatgtctatcatatgttttaaataaatatgcagaaagagaatatc 522
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 745  aagatttagatatattatgtctatcatatgttttaaataaatatacataaagagaatatc 686

                                                                        
Query: 523  attctattttgattttgcacatactactcaaaattattcactgagagtatattaaaatca 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  attctattttgattttgcacatactactcaaaattattcactgagagtatattaaaatca 626

                                                                        
Query: 583  ttaatataatgatgcttgaatgatagctcatcagttaaaaaagcatattctatctttgaa 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  ttaatataatgatgcttgaatgatagctcatcagttaaaaaagcatattctatctttgaa 566

               
Query: 643  gag 645
            |||
Sbjct: 565  gag 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)