Query= MSMg01no346_l15.b1 MSMg01no346_l15.b1 CHROMAT_FILE:
MSMg01no346_l15.b1 PHD_FILE: MSMg01no346_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:29 2005
(424 letters)
>mm_chr3_136626043_136626865
Length = 823
Score = 712 bits (368), Expect = 0.0
Identities = 407/420 (96%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgattacctttgctttgtaaaactgactgtgaattttttacataatcatgcc 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattctttgaataaatttgctttgtaaaactgactgtgaattttttacataatcatgcc 564
Query: 65 atacaacggagtatttaaaaagtgcctaaaaagcagatgcaacactggcagggaagaaaa 124
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 atacaactgagtattttaaaagtgcctaaaaagcagatgccacactggcagggaagaaaa 504
Query: 125 aaaaagtcatttagcaagttggtggcacatagacaaaaaaggaattgtttcaagcaactt 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 aaaaagtcatttagcaagttggtggcacatagacaagaaaggaattgtttcaagcaactt 444
Query: 185 tacacgacagcaaattgattatgcattcatgatgacatatgttaaagacaaaaacaattg 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tacaggacagcaaattgattatgcattcatgatgacatatgttaaagacaaaaacaattg 384
Query: 245 aatcaaaaataacaagaaaacttaaacacattgttagaggcaacttcatattcttattat 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 aatcaaaaataacaagaaaacttaaatacattgttagaggcaacttcatattcttattat 324
Query: 305 aagatgttaatgcatccctgtggcataagtctaatgagtaattatgctgactcatttgaa 364
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 aagatggtaatgcatccctgtggcataaatctaatgagtaattatgctgactcatttgaa 264
Query: 365 accatgcttttacattgtgtgcagttgtgtaatggggggtgggggggcaaaaaacagatg 424
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 263 accatgcttttacattgtgtgcagttgtgtaatggggggt-ggggggcaagaaacagatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 823
Length adjustment: 9
Effective length of query: 415
Effective length of database: 814
Effective search space: 337810
Effective search space used: 337810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_l15.g1 MSMg01no346_l15.g1 CHROMAT_FILE:
MSMg01no346_l15.g1 PHD_FILE: MSMg01no346_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:29 2005
(506 letters)
>mm_chr3_136481140_136482045
Length = 906
Score = 932 bits (482), Expect = 0.0
Identities = 500/506 (98%)
Strand = Plus / Plus
Query: 1 tcttgaatatgtctctggggaatgtgaaggcaaatgaatttctagtgtgacttactgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgaatatgtctctggggaatgtgaaggcaaatgaatttctagtgtgacttactgtcc 260
Query: 61 tgatttaaagattaaatttgcacatgcgcaccatccccgtccatgattgaactaggtgat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatttaaagattaaattcgcacatgcgcaccatccccgtccatgattgaactaggtgat 320
Query: 121 ttcacagaaataggtctgaactccttaagattcacagaggggccatgtgctcagaaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacagaaataggtctgaactccttaagattcacagaggggccatgtgctcagaaagta 380
Query: 181 cctgaaatatggaagggtgatgtagagcccctttcaggactttaaaggcaacaggtaacg 240
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgaaatatggaagggtaatgaagagcccctttcaggactttaaaggcaacaggtaacg 440
Query: 241 agaatcacattttaagaacatttaatcccagagaattctgacaaacaccatgtgctgatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 agaatcacattttaagaacatttaatcccagagaattctgacaaacaccatgtgctggtc 500
Query: 301 attgaaaggcccttgtgaaccctacagtttggtaatgaatttataccacctgcatgccag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 attgaaaggcccttgtgaaccctacagtttggtaatgaatttataccacctgtatgccag 560
Query: 361 acactcctcagtacttgggaaacatcagggaagaagaaacaagataaaggcatatctcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactcctcagtacttgggaaacatcagggaagaagaaacaagataaaggcatatctcac 620
Query: 421 gttatggctgacatagctgagactcagtgaggatcagagcttgctggaagatagggtttc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gttatggctgacatagctgagactcagtgaggatcagagcttgctggaagatagggttgc 680
Query: 481 aagaaaagtgggatttgaattcagat 506
||||||||||||||||||||||||||
Sbjct: 681 aagaaaagtgggatttgaattcagat 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
