BAC Information

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BAC

Clone NameMSMg01-346N01
Chromosome3 (Build37)
Map Location 79,163,850 - 79,319,912
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346N01.T7 (MSMg01no346_n01.b1)MSMg01-346N01.TJ (MSMg01no346_n01.g1)
ACCAG459311AG459312
length735738
length of high quality
(start - end)
541 (38 - 578)505 (68 - 572)
definitionCHROMAT_FILE: MSMg01no346_n01.b1 PHD_FILE: MSMg01no346_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:36 2005CHROMAT_FILE: MSMg01no346_n01.g1 PHD_FILE: MSMg01no346_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,163,850 - 79,164,387)(79,319,408 - 79,319,912)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
ATGTATTCTAGGCTGGTCTGACTTTGCAAACTTCCTGTGCTCCATCACAA
ACTGACACTTTCTGCCTCAGCTTCCCATGCTAGGATCACAGACATGTCTG
TCCCATTGTGCCTAATTTACAAATACATTTTTTACAAGATTTTTTTTTCT
CATGAATTTCCACTTGACCCAAAATAAAGCTAGGTGTTAAACAGTGAATA
TGAGACACTGGAAAGGCCCATAAGCGTATGCTGGGGTTGTACCTGTAGTC
TCAACCACACCACAGACTGCAGAAACACAGACAGGAAGATTGCTTAAGCC
AGGGTTTAAATACAGCCTAAGCAACACGGAAAGGCCTATTCAGAAAGATT
AATTAATAATTAAGTAAATACGGAAGCACAGAAGTAGATGATCTAGCTTA
CCCTGACGTTTCTCATGAAGCCACCTGTATTCAGAGCTCATAACTGCTGA
ATCGTTTACCCAGCCTAGTTCAGAGAGAATGGACGTCTCTGCCCAGCCTC
TGTGTGCCTGGGCTGTTTGTGTGTGATACTCAGATTGCAGGCTTAGCAAA
AAAAGCTAACACATTTATTCACCCATAGTATAGTCTGTGTAGGAGAAAAC
CAGTGTATGGAAAGCCAGGAAACTGCAACACTCCCGCCTTGTGAAAGGGC
GGTCAATAACTATGACTTTTGCTAAAAACAAACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTAGAAGCAGGTTCTCACGAAGGCTTCTGTAG
GGGGAGAGTTCTATTCTGGGGTGGGTGAGGGTCACTCTCAATAAAACTTG
GAAGTGAGCGTGTGAGGGGGTATAGAGTAGGTAATCCTATTACCTCTGAC
CTTTGAGGGCCAGGTTCCCATCACATGCTCCATGGTCCAAGGTTGCTCCT
GTCCCAGGGTTCGGCCCTCATCTCTCACAGCTCTGTCCTGCTGCTTTTCT
TTCCTGCTGCACCAGGAATGCTAGAAAGAGTGTGAAAAACACAAGCCTGC
ATGTCCAGGCTGATAGGTTTCTTTCTTAGTGGCATTTAGTTGGTAAAAAT
TTGAATGTTAGTGGTCATCTTTCTGCTCATGAGCTCCAAACATTAGGACT
GTATAGTACTGAAATCCAAAAACCAGAACAGAGAGCAGTATTTGTTTATG
GCTTCTTGGTGTACATTTAAATGTAGAGACTGATACTTGAATTATTTAAA
GAGAGTGATATGTCTATCATCCATCTCCATGTCTCAGTCTACACACATGT
ACCGCCATTTTCTGGGTAGTATCTCCTCCCCAGATATTTCAGACTCCCAT
GAATATTGTTGTTATTATAAAGAACAATTAACCTGAGATTTGGGTTTTAA
TGCAATTTAAGCCCCCGGATGTGTTGACCCATTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_n01.b1 MSMg01no346_n01.b1 CHROMAT_FILE:
MSMg01no346_n01.b1 PHD_FILE: MSMg01no346_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:36 2005
         (541 letters)



>mm_chr3_79163647_79164587
          Length = 941

 Score =  986 bits (510), Expect = 0.0
 Identities = 531/538 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattatgtattctaggctggtctgactttgcaaacttcctgtgctccatcacaa 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 204 ggaattcattatgtactctaggctggtctgactttgcaaacttcctgtgctccatcacgg 263

                                                                       
Query: 64  actgacactttctgcctcagcttcccatgctaggatcacagacatgtctgtcccattgtg 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgacactttctgcctcagcctcccatgctaggatcacagacatgtctgtcccattgtg 323

                                                                       
Query: 124 cctaatttacaaatacattttttacaagatttttttttctcatgaatttccacttgaccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctaatttacaaatacattttttacaagatttttttttctcatgaatttccacttgaccc 383

                                                                       
Query: 184 aaaataaagctaggtgttaaacagtgaatatgagacactggaaaggcccataagcgtatg 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaataaagctagatgttaaacagtgaatatgagacactggaaaggcccataagcgtatg 443

                                                                       
Query: 244 ctggggttgtacctgtagtctcaaccacaccacagactgcagaaacacagacaggaagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctggggttgtacctgtagtctcaaccacaccacagactgcagaaacacagacaggaagat 503

                                                                       
Query: 304 tgcttaagccagggtttaaatacagcctaagcaacacggaaaggcctattcagaaagatt 363
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 tgcttaagccagggtttaaatacagcctaagcaacagggaaaggcctattcagaaagatt 563

                                                                       
Query: 364 aattaataattaagtaaatacggaagcacagaagtagatgatctagcttaccctgacgtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aattaataattaagtaaatacggaagcacagaagtagatgatctagcttaccctgacgtt 623

                                                                       
Query: 424 tctcatgaagccacctgtattcagagctcataactgctgaatcgtttacccagcctagtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctcatgaagccacctgtattcagagctcataactgctgaatcgtttacccagcctagtt 683

                                                                     
Query: 484 cagagagaatggacgtctctgcccagcctctgtgtgcctgggctgtttgtgtgtgata 541
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagagagaatgaacgtctctgcccagcctctgtgtgcctgggctgtttgtgtgtgata 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no346_n01.g1 MSMg01no346_n01.g1 CHROMAT_FILE:
MSMg01no346_n01.g1 PHD_FILE: MSMg01no346_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:36 2005
         (505 letters)



>mm_chr3_79319208_79320112
          Length = 905

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagaagcaggttctcacgaaggcttctgtagggggagagttctattctggggtgggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agtagaagcaggttctcacgaaggcttctgtagggggagagttctattctggggtgggtg 646

                                                                       
Query: 61  agggtcactctcaataaaacttggaagtgagcgtgtgagggggtatagagtaggtaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agggtcactctcaataaaacttggaagtgagcgtgtgagggggtatagagtaggtaatcc 586

                                                                       
Query: 121 tattacctctgacctttgagggccaggttcccatcacatgctccatggtccaaggttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tattacctctgacctttgagggccaggttcccatcacatgctccatggtccaaggttgct 526

                                                                       
Query: 181 cctgtcccagggttcggccctcatctctcacagctctgtcctgctgcttttctttcctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cctgtcccagggttcggccctcatctctcacagctctgtcctgctgcttttctttcctgc 466

                                                                       
Query: 241 tgcaccaggaatgctagaaagagtgtgaaaaacacaagcctgcatgtccaggctgatagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgcaccaggaatgctagaaagagtgtgaaaaacacaagcctgcatgtccaggctgatagg 406

                                                                       
Query: 301 tttctttcttagtggcatttagttggtaaaaatttgaatgttagtggtcatctttctgct 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 405 tttctttcttagtggcatttagttggtaaaaatttggatgttagtggtcatctttctgct 346

                                                                       
Query: 361 catgagctccaaacattaggactgtatagtactgaaatccaaaaaccagaacagagagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 catgagctccaaacattaggactgtatagtactgaaatccaaaaaccagaacagagagca 286

                                                                       
Query: 421 gtatttgtttatggcttcttggtgtacatttaaatgtagagactgatacttgaattattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtatttgtttatggcttcttggtgtacatttaaatgtagagactgatacttgaattattt 226

                                    
Query: 481 aaagagagtgatatgtctatcatcc 505
           |||||||||||||||||||||||||
Sbjct: 225 aaagagagtgatatgtctatcatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)