BAC Information

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BAC

Clone NameMSMg01-346N23
Chromosome3 (Build37)
Map Location 155,978,242 - 156,138,199
singlet/doubletdoublet
Overlap genenone
Upstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
Downstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853, LOC546818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346N23.T7 (MSMg01no346_n23.b1)MSMg01-346N23.TJ (MSMg01no346_n23.g1)
ACCAG459355AG459356
length786773
length of high quality
(start - end)		468 (34 - 501)492 (64 - 555)
definitionCHROMAT_FILE: MSMg01no346_n23.b1 PHD_FILE: MSMg01no346_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:40 2005CHROMAT_FILE: MSMg01no346_n23.g1 PHD_FILE: MSMg01no346_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,978,242 - 155,978,706)(156,137,883 - 156,138,199)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTTCC
AGAGTCACTCCCCCTGGCAACTCAGACCAAAGAATTTGCTGATGGTGCCC
TCTCTATATAGACAGAAGCCCAACCTAAACACTTTGTGAAAATCGTAAGG
ACTTACATGCCTTAGTAATCTGAACACAAACTTAAAACTGCAGAATAGTG
GAAATTAAAGTCTATTGCTCCCAAAACCCAGATTGCAGTATGTCACTGTG
ACTGGGAAAAATAAAATAATTCCTATACTAGCGGTTGGTACCACCAGTGG
ATTACAAGAATACTAAGACAGAAAATGCAATTCAATAAAATTCAAACAGG
AGTTAATCTGTTAGAATCAAGTGGGGCTGTACTGTAAGGTACATGCTACT
GCTTATAAAGAGGTGACAACAGAGTCCAGTGATGTTAGTCAACCAATGTA
CATACAATTGCTACACAATAATTTGTTTAGTAGTATCACAGACTTTCTGA
ATTAAAAAAAGACAAAGTATCTTCATAGTCCTATTAACTCAAATTTACAT
TATCAGAACATCTAACCCCCTTGCCTTTTGGAAAAATGGCCAAAAAACAT
TTAAGAAAGGTAATCTTTCTTTATAAAAAAGGCTTTTGGATCCCAGGGAA
ATGGGGATCCCACGGAAAAAGGGTTTGTGGTTAACACCAATTTTTTCGCC
CTTATGTGAAAGAAGGTTTTCACACCCTCATAAAATTTTTCGGGAAATAG
GGAGTGGAGGAGATCCGCACCCTTTAACACTCAACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTGTCAAATCCCCTAATGTTAGAACATAAAAGTGTT
TTCCTAACGTTAAAAAAGAACAAACTTAATTTTTTTAAACAAAAACTTGT
TAAAAACAGAGCGTGTTAAACTGTTTTATCAAATGGGAACAAAACACCCA
TAGAAGGAGTTACAGAGACAAAATTTGGAGCTGTGATGAAAGGATGGACA
ATCTAGTGACTGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAAT
GCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATG
TAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGA
TGATCACAGTCAGCTATTGGATGGGTCACACGGCCCCTAATGGAGGAGCT
AGAGAAATTACCCAAGGAGCTATAGGGAACTGCAACCCTATAGGTGGAAC
AACAATATGAACTAACCAGTACCCAGGAGCTCTTGTCTTTAGCTGCATAT
GTATCAAAAGATGGGCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGG
ACTTGCAAACTTTATATGCCCCACTAACAGGGGACGCCCAGGGCAAAAAG
GGGGAGTGGTGGGTAAAGGAATTATCNTTTATTCCCCCCCTTTTCCTTTT
TATTTCCACCCATCTATTTTCCCCTTCTCTTATTATCCTTTTCGTAATCA
CCTTTTTACCCACTATATCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_n23.b1 MSMg01no346_n23.b1 CHROMAT_FILE:
MSMg01no346_n23.b1 PHD_FILE: MSMg01no346_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:40 2005
         (468 letters)



>mm_chr3_155978039_155978906
          Length = 868

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatttccagagtcactccccctggcaactcagaccaaagaatttgctgatggt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatttccagagtcactccccctggcaactcagaccaaagaatttgctgatggt 263

                                                                       
Query: 64  gccctctctatatagacagaagcccaacctaaacactttgtgaaaatcgtaaggacttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccctctctatatagacagaagcccaacctaaacactttgtgaaaatcgtaaggacttac 323

                                                                       
Query: 124 atgccttagtaatctgaacacaaacttaaaactgcagaatagtggaaattaaagtctatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgccttagtaatctgaacacaaacttaaaactgcagaatagtggaaattaaagtctatt 383

                                                                       
Query: 184 gctcccaaaacccagattgcagtatgtcactgtgactgggaaaaataaaataattcctat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctcccaaaacccagattgcagtatgtcactgtgactgggaaaaataaaataattcctat 443

                                                                       
Query: 244 actagcggttggtaccaccagtggattacaagaatactaagacagaaaatgcaattcaat 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actagcggttggtaccacccgtggattacaagaatactaagacagaaaatgcaattcaat 503

                                                                       
Query: 304 aaaattcaaacaggagttaatctgttagaatcaagtggggctgtactgtaaggtacatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaattcaaacaggagttaatctgttagaatcaagtggggctgtactgtaaggtacatgc 563

                                                                       
Query: 364 tactgcttataaagaggtgacaacagagtccagtgatgttagtcaaccaatgtacataca 423
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 tactgcttataaagaggtgacaacagagtccagtgatgttaatcaaccaatgtacataca 623

                                                        
Query: 424 attgctacacaataatttgtttagtagtatcacagactttctgaa 468
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attgctacacaataatttgtttagtagtatcacagactttctgaa 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_n23.g1 MSMg01no346_n23.g1 CHROMAT_FILE:
MSMg01no346_n23.g1 PHD_FILE: MSMg01no346_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:40 2005
         (492 letters)



>mm_chr3_156137883_156138774
          Length = 892

 Score =  551 bits (285), Expect = e-161
 Identities = 309/317 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtcaaatcccctaatgttagaacataaaagtgttttcctaacgttaaaaaagaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agtgtcaaatcccctaatgttagaacataaaagtgttttcctaacgttaaaaaagaacaa 258

                                                                       
Query: 61  acttaatttttttaaacaaaaacttgttaaaaacagagcgtgttaaactgttttatcaaa 120
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 acttaattttttaaaacaaaaatttgttaaaaacagagcgtgttaaactgttttatcaaa 198

                                                                       
Query: 121 tgggaacaaaacacccatagaaggagttacagagacaaaatttggagctgtgatgaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgggaacaaaacacccatagaaggagttacagagacaaaatttggagctgtgatgaaagg 138

                                                                       
Query: 181 atggacaatctagtgactgccatatgcagggatccatcccataatcagcttccaaatgct 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atggaccatctagtgactgccatatgcagggatccatcccataatcagcttccaaatgct 78

                                                                       
Query: 241 gacaccattgcatacactagcaagattttattgaaaggacccagatgtagctgtctcttg 300
           |||||||||||||||||||||||||||||  ||||||||||||| | ||||| |||||||
Sbjct: 77  gacaccattgcatacactagcaagattttgctgaaaggacccagttatagctctctcttg 18

                            
Query: 301 tgagactatgccggggc 317
           |||||||||||||||||
Sbjct: 17  tgagactatgccggggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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