Query= MSMg01no347_b11.b1 MSMg01no347_b11.b1 CHROMAT_FILE:
MSMg01no347_b11.b1 PHD_FILE: MSMg01no347_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:57 2005
(484 letters)
>mm_chr3_131339894_131340777
Length = 884
Score = 739 bits (382), Expect = 0.0
Identities = 395/401 (98%), Gaps = 3/401 (0%)
Strand = Plus / Minus
Query: 87 tacttacttacttacttacttacttacttacttatagagagaggacatacatagatgaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tacttacttacttacttacttacttacttacttatagagagaggacatacatagatgaga 825
Query: 147 tctgtctgacacatgtctggaagtcagaggacaattagctagaatggtccttcttctacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tctgtctgacacatgtctggaagtcagaggacaattagctagaatggtccttcttctacc 765
Query: 207 atgaaggctaaaaagaccaaactcagg---acaagttttacagcaagcagctatccctgc 263
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 764 atgaaggctaaaaagaccaaactcaggacaacaagttttacagcaagcagctatccctgc 705
Query: 264 tgcaccatctcaccaacctctatactattatgttaacacattccagtaatactaactggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgcaccatctcaccaacctctatactattatgttaacacattccagtaatactaactggt 645
Query: 324 cttgaaacatatctctcctccaatgtaatgacatatgattttcactgatactacatggaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cttgaaacatatctctcctccaatgtaatgacatatgattttcactgatactacatggaa 585
Query: 384 ctttctatttaaacttgaatcccgagtacaaactatagaatatccagtaggctgaggcta 443
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 584 ctttctatttaaacttgaatcccgattacaaactatagaatatccagtaggctggggcta 525
Query: 444 atggagtcttagcagcagtanactttcctaaatttctataa 484
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 524 atggagtcttagcagcagtaaactttcctaaatttctataa 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_b11.g1 MSMg01no347_b11.g1 CHROMAT_FILE:
MSMg01no347_b11.g1 PHD_FILE: MSMg01no347_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:57 2005
(528 letters)
>mm_chr3_131176013_131176939
Length = 927
Score = 963 bits (498), Expect = 0.0
Identities = 521/530 (98%), Gaps = 5/530 (0%)
Strand = Plus / Plus
Query: 1 tgggatagaggcaggaagatgtatccagtcagacacacagtacttgagctacaggtaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggatagaggcaggaagatgtatccagtcagacacacagtacttgagctacaggtaacc 260
Query: 61 agctacatggcagaacacagcctagactaaatgggatattttaagttacatcgaatcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctacatggcagaacacagcctagactaaatgggatattttaagttacatcgaatcaga 320
Query: 121 gaagagcccagctgtatggccaaggtattggtaaatatattttgagtctgagtcttgctt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagagcccagatgtatggccaaggtattggtaaatatattttgagtctgagtcttgctt 380
Query: 181 ctgggagcatgg--cgttgggaggaagaacaaggtgtaattacaacagtcttaccagcaa 238
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ctgggagcatgggcc--tgggaggaagaacaaggagtaattacaacagtcttaccagcaa 438
Query: 239 tggttcttcaaagtgggcagggaccactcatggtaccagtgttcacattttctagaacat 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgattcttcaaagtgggcagggaccactcatggtaccagtgttcacattttctagaacat 498
Query: 299 cttgcaggttataaatgaaacagtcatttgcctttgaaaagggcactgagtcatgctggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttgcaggttataaatgaaacagtcatttgcctttgaaaagggcactgagtcatgctggg 558
Query: 359 aaagatacttgcatttactggacctcctccacgtgagcatctgcgtgtacatggctaagg 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 559 aaagatacttgcatttactggacctcctccacgtgagcatctgtgtgtacatggctaagg 618
Query: 419 tggagccagtggacagagagagttgcaagtagaagggggggccaaaagacaacagtccac 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 619 tggagccagtggacagagagagttgcaagtagaagggggg-ccaaaagacaacagtccac 677
Query: 479 ccaacaccctccgctatcaatctctcctcacaacccacgttcatctctca 528
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccaacaccctccgctatcaatctctcctcacaacccacgttcatctctca 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space: 475006
Effective search space used: 475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
