BAC Information

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BAC

Clone NameMSMg01-347E14
Chromosome3 (Build37)
Map Location 17,182,287 - 17,182,788
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347E14.T7 (MSMg01no347_e14.b1)MSMg01-347E14.TJ (MSMg01no347_e14.g1)
ACCAG459665AG459666
length759765
length of high quality
(start - end)		507 (47 - 553)540 (73 - 612)
definitionCHROMAT_FILE: MSMg01no347_e14.b1 PHD_FILE: MSMg01no347_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:13 2005CHROMAT_FILE: MSMg01no347_e14.g1 PHD_FILE: MSMg01no347_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNATTATTCCTCGTGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATGCTATTCTCTTAAAAAATGCTCTGGGTCGGATTTGAAATAT
ATATATCAACATTTGGTGTCTTTTATGTAGCAATGCTCAAAGATGAAATT
TTGCGAACTGATTTGATCATGAGTACTTTTCTCTATTAATGGTATTTATT
GCTGAGCTTATAATAATTGCATAATCTTTGGAGACGTAAAACGTAGGATT
TGGGACCTAGGTGAAGGTCATGAGACATTCTGAACATGTCATTGGGCTTT
GTCTTGTGCCTATTTCCTTGCTTGCTCCTTTCCTGAGTCTTTCAAACAGT
CATGTACTCCTTAATGTAAAGTTCTGTCTCATTAAGATAAAAGAATATGG
GTAAAAATCTTTATGATCATCAGGTCCAATAAATTCTTGATTTTTCTCAG
GCACTTTTGTGACAGTGACAGAAAACTGAATAGCACAATGAAATGTTGAC
TAGGTTGACTAATTTAATACTGATGACAAGTGAGAAATAACTTTATAAGG
ACAATGTTATTGACAAAGGCTAACAATAAACAGATGTGAAGTATTATACT
AAAGTGGCCTAAATATGAACGAACAAAAACCCCTCCACATGATCCTGGAT
CTGGATCAAATCGATGCTGCTGCTGGAGAAAATTTAGATATTCTTGCATT
GAGGAATATCCACATGGGGAACACCTTTCTTTCCTGTTTTCACCCTTTGT
TTTTCACAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTGTTAGAATGGTTGTACAACTCCTT
TCTCCACCTCGTCACCATAGTGTGCTGTTCCTCGAGTTTGTTATCTTAGC
CATTCTGATGGGTGTGAGGTGGAATCTCAGAGTCATTTTGATTTGTATTT
CTCTGATGACTAAAGATGCTGAACATATCTTTGTTTCTTGGCAATAAGGG
ATTCCTCTGTTGAGAATTCTCTGTTTACCCCTATACCCCAGTTTTAAATT
GGGTTACTTTGTGTCTAACTTCTTGAGTTCTTTATATATTGTGGATATAT
CCTGTCAGTTATAGGGTTGATGAAGGTCATTTCCCAATTTGTAAGTGCAT
ATTAAATATATTTTACATGGGAAATTTTAAAGTCTTAAATATTATATATG
GGTGTTTTAAAAATATGGAAACATAATTTTTATATTTTAATAAATAATTA
GATTATTTTAATTATTAAAAACCCAAAAATTTAATAGATGGAATTGGTTT
TAATAATGTTGAACTTTTATATGAAATGTTTTATATATTTTTCACATATA
TTTGACTGATTGCATTCTAAGATTCATTTGAAAAAGAATAAAAATTCTTG
AGACTATATTCTTGTATAGTTTTTCTTACAAAATAATTTAATAAATATTT
TTTTAAGGATGTCTTAAGGTTTTACTTTTGTGAACAGAACCATTGACCAA
GGCAGTTTTTTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_e14.b1 MSMg01no347_e14.b1 CHROMAT_FILE:
MSMg01no347_e14.b1 PHD_FILE: MSMg01no347_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:13 2005
         (507 letters)



>mm_chr3_17182083_17182988
          Length = 906

 Score =  942 bits (487), Expect = 0.0
 Identities = 499/503 (99%), Gaps = 1/503 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgctattctcttaaaaaatgctctgggtcggatttgaaatatatatatcaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gaattcaatgctattctcttaaaaaatgctctgggtcggatttgaaatatatatatcaac 647

                                                                       
Query: 65  atttggtgtcttttatgtagcaatgctcaaagatgaaattttgcgaactgatttgatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atttggtgtcttttatgtagcaatgctcaaagatgaaattttgcgaactgatttgatcat 587

                                                                       
Query: 125 gagtacttttctctattaatggtatttattgctgagcttataataattgcataatctttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gagtacttttctctattaatggtatttattgctgagcttataataattgcataatctttg 527

                                                                       
Query: 185 gagacgtaaaacgtaggatttgggacctaggtgaaggtcatgagacattctgaacatgtc 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gagatgtaaaacgtaggatttgggacctaggtgaaggtcatgagacattctgaacatgtc 467

                                                                       
Query: 245 attgggctttgtcttgtgcctatttccttgcttgctcctttcctgagtctttcaaacagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attgggctttgtcttgtgcctatttccttgcttgctcctttcctgagtctttcaaacagt 407

                                                                       
Query: 305 catgtactccttaatgtaaagttctgtctcattaagataaaagaatatgggtaaaaatct 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 406 catgtactccttaatgtaaagttctgtctcattaagataaaagaatatgg-taaaaatct 348

                                                                       
Query: 365 ttatgatcatcaggtccaataaattcttgatttttctcaggcacttttgtgacagtgaca 424
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttatgatcatcaggtgcaataaattcttgatttttctcaggcacttttgtgacagtgaca 288

                                                                       
Query: 425 gaaaactgaatagcacaatgaaatgttgactaggttgactaatttaatactgatgacaag 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 287 gaaaactgaatagcacaatgaaatgttgactaggttgactaatttaatactgatgataag 228

                                  
Query: 485 tgagaaataactttataaggaca 507
           |||||||||||||||||||||||
Sbjct: 227 tgagaaataactttataaggaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space:   445312
Effective search space used:   445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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