NNCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCCAAGTACGAACTTTGTTTTCTGTACAGTTTTGTTACAGAA
ATGGTTAAAAAAAAAGAAAAAAAAACCAAAAAACCCCAACTCTTTAAACA
GTGATTTATAAAATTTTACTTAGGTCTACTCTACTTAACTGTGTCTACTC
TTTTCACGTCAATATGGACCCCAACTTCCATCCTTCTAAACTCCTGCAAT
GAGTCATGGCTGCCTTGAGCCTATATAACAATTGTCTTTTGTTATTGAAC
GTTTTCTTTTTGATGCTTTTAAATTCTTCAGGCTATCTTAAAAGTATAAG
CTTATGGAGGTGGGCAATGATGTTGCATAGATCAGGAGCAAGCTTCATTG
AGTGGTAGCTCTGGGCCAGGAATTGTTCCACACTGAGTGTATATTGCCAT
TTTAAAGGATCTTAGTTTCTTAATTTTTGTGAGAAAAATGAAGCTGACAA
ATATTGTTACATTCCTTACGTGAAGATTCTAAACTATACTCAGTCTATGT
ATTGTCTTTTATCATCAAATTTGTCTTTAAATCTAATACCATATAAAACG
CTGGTTTTGACCTTTGTCTTACGCATCCTTTCCCACTATTTTCTTCATCT
TATATCTTTTGTTCGAACCAGCCATCATTTCCCTTCCTACACTTATCCTT
TCCAATCTTTTTTCAACATTCTTAACTTTCCCCTTTATTAACCATTCTTT
G

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACGGAATGGCAGA
GAAGCACCTGAAAAACTGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCAGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACTATATGTACTCACTGATAAGT
GGATATTTACCCCAAACCTAAGATACCCAAGATATAAGATACAATTTCCC
AAACCCTTAAATTTCCGAAAAATGAAGAATGGATGTGGGGACACCATGCC
CCCCCCTTTAATCGGGAATG

Query= MSMg01no347_h02.b1 MSMg01no347_h02.b1 CHROMAT_FILE:
MSMg01no347_h02.b1 PHD_FILE: MSMg01no347_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:25 2005
         (463 letters)



>mm_chr3_80977162_80978024
          Length = 863

 Score =  741 bits (383), Expect = 0.0
 Identities = 432/459 (94%), Gaps = 18/459 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccaagtacgaactttgttttctgtacagttttgttacagaaatggttaaaaaa 64
           |||||||||||||| |||||||||||| |||||||||||||||||||||||||||     
Sbjct: 223 gaattccccaagtaggaactttgttttttgtacagttttgttacagaaatggtta----- 277

                                                                       
Query: 65  aaagaaaaaaaaaccaaaaaaccccaactctttaaacagtgatttataaaattttactta 124
               |||||||||         |||||||||||||||||||||||||| |||||||||||
Sbjct: 278 ----aaaaaaaaa---------cccaactctttaaacagtgatttatacaattttactta 324

                                                                       
Query: 125 ggtctactctacttaactgtgtctactcttttcacgtcaatatggaccccaacttccatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtctactctacttaactgtgtctactcttttcacgtcaatatggaccccaacttccatc 384

                                                                       
Query: 185 cttctaaactcctgcaatgagtcatggctgccttgagcctatataacaattgtcttttgt 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttctaaactcctgtaatgagtcatggctgccttgagcctatataacaattgtcttttgt 444

                                                                       
Query: 245 tattgaacgttttctttttgatgcttttaaattcttcaggctatcttaaaagtataagct 304
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 tattgaacgttctctttttgatgcttttaaattcttcaggctatattaaaagtataagct 504

                                                                       
Query: 305 tatggaggtgggcaatgatgttgcatagatcaggagcaagcttcattgagtggtagctct 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 tatggaggtgggcaatgatgctgcatagatcaggagcaagcttcattgagtggcagctct 564

                                                                       
Query: 365 gggccaggaattgttccacactgagtgtatattgccattttaaaggatcttagtttctta 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 gggccaggaattgttccacactgagtgtatcttgccattttaaaggatcttagtttctta 624

                                                  
Query: 425 atttttgtgagaaaaatgaagctgacaaatattgttaca 463
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttttgtgagaaaaatgaagctgacaaatattgttaca 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)