Query= MSMg01no347_l12.b1 MSMg01no347_l12.b1 CHROMAT_FILE:
MSMg01no347_l12.b1 PHD_FILE: MSMg01no347_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:47 2005
(505 letters)
>mm_chr3_129471631_129472534
Length = 904
Score = 764 bits (395), Expect = 0.0
Identities = 462/503 (91%), Gaps = 34/503 (6%)
Strand = Plus / Minus
Query: 5 gaattccacacattttctggttgatgaagattttgcatctgtaagatacacgcacattta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaattccacacattttctggttgatgaagattttgcatctgtaagatacacgcacattta 842
Query: 65 attattaagaataccagttactcactgtgtgtgtat-gggcaggagagcttattcttacc 123
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 841 attattaagaataccagttactcactgtgtgtgtatggggcgggagagcttattcttacc 782
Query: 124 ttgttttatcttctagtatcatttcgagagttttgcttcctgtgtcatcaaatcagaaga 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 781 ttgttttatcttctagtatcatttctagagttttgcttcctgtgtcatcaaataagaaga 722
Query: 184 caattc-ctctaacagtttcggtcttcactatgcctggaaaggcctcctcggtcttcact 242
| |||| |||||||||||||||||||| || |
Sbjct: 721 c-attctctctaacagtttcggtcttc-------------ag-----------------t 693
Query: 243 atgcctggaaaggcctcctcctcacatatgtattctttaaggtctctgtgccttttagag 302
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atgcctggaaaggcctcctcttcacatatgtattctttaaggtctctgtgccttttagag 633
Query: 303 ttgtacttcactttgaaatgttaagtctatctgcacttctaatttctatatgatatgaag 362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 632 ttgtacttcactttgaaatgttaagtctatctgcacttctaatttatatatgatatgaag 573
Query: 363 tcgaaggcagatacaatatcgaatttgagtgaaataaaagtaagcacagtgttcttaaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcgaaggcagatacaatatcgaatttgagtgaaataaaagtaagcacagtgttcttaaat 513
Query: 423 taacggtaattcttgtaactatacaatcagtcagactgtttacatttgaaatgtcataca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 taacggtaattcttgtaactatacaatcagtcagactgtttacatttgaaatgtcataca 453
Query: 483 tttatgatttaaaaaaaaaagaa 505
||||||||| |||| || |||||
Sbjct: 452 tttatgatt-aaaagaagaagaa 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space: 442530
Effective search space used: 442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_l12.g1 MSMg01no347_l12.g1 CHROMAT_FILE:
MSMg01no347_l12.g1 PHD_FILE: MSMg01no347_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:47 2005
(461 letters)
>mm_chr3_129312470_129313331
Length = 862
Score = 878 bits (454), Expect = 0.0
Identities = 460/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 1 attcctatttcagatactgctcatactttccagagtcctaaaacttagaaccatatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctatttcagatactgctcatactttccagagtcctaaaacttagaaccatatgtgt 260
Query: 61 gtaattaaagtgactgaatttttttt-aaaaagtttcattacttgcacaatgcaagttat 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gtaattaaagtgactgaatttttttttaaaaagtttcattacttgcacaatgcaagttat 320
Query: 120 taatataagcagtggatttctttgatccccttccccctcttttttcccatttgtaagggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatataagcagtggatttctttgatccccttccccctcttttttcccatttgtaagggt 380
Query: 180 acaatggtgtgtggagaagtttctcctcccctccccacatcatggagatctgaaaagcat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaatggtgtgtggagaagtttctcctcccctccccacatcatggagatctgaaaagcat 440
Query: 240 ccgtaatggaacagacggtgtgctcaggtgactgaaggagccgggagaggtggttgttca 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ccgtaatggaacagacggtgtgctcaggtgactgaaggagcagggagaggtggttgttca 500
Query: 300 ctgatgccgagttttgtcgggctgaagtagaaatcctcctaatagtgtactagtgacttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgatgccgagttttgtcgggctgaagtagaaatcctcctaatagtgtactagtgacttg 560
Query: 360 aagacgttaggaaccacaaggcatttcagagtcaccttatttgtaagaagcagtgtctgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagacgttaggaaccacaaggcatttcagagtcaccttatttgtaagaagcagtgtctgg 620
Query: 420 gttctctgaaagcatttagcttcaagttaatctttatactgg 461
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttctctgaaagcatttagcttcaagttaatctttatactgg 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 862
Length adjustment: 10
Effective length of query: 451
Effective length of database: 852
Effective search space: 384252
Effective search space used: 384252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
