NTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGTGATCAGGTTCATGATGTAACATGCCCAACTAATCAATAA
AGATATTAATCTTTAATTATAAAGATAAATTTAATAAAAATAATTAATTT
TGTTAACAATATCAAAACCAATATATTAAAAGTATTTTCATCATCAAATA
CATATGAAAATAATTTATAATATTTTATCAAAGCCATTAATACTATGTTC
ATATTTTATTCTTACCACAAATATCCATTTTAACAAGTCAGCTTTCAGGT
ACTAAATAACCATAGATAGGGAGCAGTTACCAAAATAGTGTAGTATTGAA
AAATTGAGGGTGCCAATTTAAGAGACCTGTATCTCTACAAAAAGGCTATC
ATAGGGTTTGAGAAAACGCCTCAATTCTGGCAAAATTCCCATAGGAAAAG
GACATAGACTTTCTCTTCTTTATTAGCTATCTGTGGAAGAGTTGAGCTGC
ATGCCACTTTCCCACTGCTGCTAAGGTAGAGAGAACTAAATACAGGGACC
AGCAAAGGGCAAAAGTTGCAAGAAGCAAAGGGGCCAACAGACTCTGCCTT
TAAACCCTGACTTCTTCAGGCATTCTTTCTACAGCCTGAGAATTCCTTCT
GTTTAGAGTCACTGCACCACAGGAAAGAAGAGCTCAAATGTAATGATATT
ATGAGGAATTAAACACCTTGAAGTCTCGTGGAAAAAAATGACCCCTTAGA
GGATGGTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGT
CTGAGAAGTACCTGAAAAAATGTTCAACATCCTTAATCATCAGTGAAATG
CAAGTCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGACTAA
GATCAAAAATTTAGTTGACAGCAGATGCTGGCCAGAATGTGAAGAAAGAG
GAACACTCCTCCATTATTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCCGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGA
TCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTA
AGAAAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGTTGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAACAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCTG
AGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGAT
ATGTGGATATTAGCCCAGAAACATTTTCTATTCTGATGGAGTGTCAAATC
CGTACTTGGTCATGCAATCCATTTCTTACAGAGATTGTTGATAAAAAAAA
AAAAAG

Query= MSMg01no347_l14.b1 MSMg01no347_l14.b1 CHROMAT_FILE:
MSMg01no347_l14.b1 PHD_FILE: MSMg01no347_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:47 2005
         (586 letters)



>mm_chr3_42216561_42217546
          Length = 986

 Score = 1112 bits (575), Expect = 0.0
 Identities = 581/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgtgatcaggttcatgatgtaacatgcccaactaatcaataaagatattaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 ggaattcagtgtgatcaggttcatgatgtaacatgcccaactaatcaataaagatattaa 906

                                                                       
Query: 64  tctttaattataaagataaatttaataaaaataattaattttgttaacaatatcaaaacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tctttaattataaagataaatttaataaaaataattaattttgttaacaatatcaaaacc 846

                                                                       
Query: 124 aatatattaaaagtattttcatcatcaaatacatatgaaaataatttataatattttatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aatatattaaaagtattttcatcatcaaatacatatgaaaataatttataatattttatc 786

                                                                       
Query: 184 aaagccattaatactatgttcatattttattcttaccacaaatatccattttaacaagtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aaagccattaatactatgttcatattttattcttaccacaaatatccattttaacaagtc 726

                                                                       
Query: 244 agctttcaggtactaaataaccatagatagggagcagttaccaaaatagtgtagtattga 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agctttcaggtactaagtaaccatagatagggagcagttaccaaaatagtgtagtattga 666

                                                                       
Query: 304 aaaattgagggtgccaatttaagagacctgtatctctacaaaaaggctatcatagggttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aaaattgagggtgccaatttaagagacctgtatctctacaaaaaggctatcatagggttt 606

                                                                       
Query: 364 gagaaaacgcctcaattctggcaaaattcccataggaaaaggacatagactttctcttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gagaaaacgcctcaattctggcaaaattcccataggaaaaggacatagactttctcttct 546

                                                                       
Query: 424 ttattagctatctgtggaagagttgagctgcatgccactttcccactgctgctaaggtag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttattagctatctgtggaagagttgagctgcatgccactttcccactgctgctaaggtag 486

                                                                       
Query: 484 agagaactaaatacagggaccagcaaagggcaaaagttgcaagaagcaaaggggccaaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agagaactaaatacagggaccagcaaagggcaaaagttgcaagaagcaaaggggccaaca 426

                                                      
Query: 544 gactctgcctttaaaccctgacttcttcaggcattctttctac 586
           |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 425 gactctacctttaaaccctgacttcttcaggcattctttctac 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)