BAC Information

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BAC

Clone NameMSMg01-347L18
Chromosome3 (Build37)
Map Location 65,033,712 - 65,034,186
singlet/doubletsinglet
Overlap geneKcnab1
Upstream gene4930518C23Rik, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347L18.T7 (MSMg01no347_l18.b1)MSMg01-347L18.TJ (MSMg01no347_l18.g1)
ACCAG460004AG460005
length782760
length of high quality
(start - end)		479 (44 - 522)523 (78 - 600)
definitionCHROMAT_FILE: MSMg01no347_l18.b1 PHD_FILE: MSMg01no347_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:48 2005CHROMAT_FILE: MSMg01no347_l18.g1 PHD_FILE: MSMg01no347_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAACACCTTACAATCACAGAAACTCTCCGCAGCAGGCAAAATCACA
TGCCTGCCAGAGCATGAGTCTCATAGTCAGCTGCTGTGGGCCATCTGAAG
CAGCCTCATACCCCACACCTGGGATTAAAATGAAAACGTCCTTACAATAT
TTCTGTGTTTTAAAAAGAACTCAAAATTCCAAAATTGTCACTACACCACA
GAAATCTTCTTTGAAGAGACTTTGCCATTTCCTGTCAATGACAGATGTTT
GCAGATGTCTGCATTGCCATTTCATTTCTGTAGTCTATATTTTGTCTTTA
TGGGACGAACGGAAACTCTCTGAAGAAAATGTCCTCTCTTAGGAGAACCC
CCACACGAAGTAGACTCTTCAGTCACACACACTCCAGCTGTGTCAAACAC
CTCTTCCTCACACTGCCATCTGTACCCAGAAACAAAAGATGGAATTGTTT
CTGCAAAGAATTTTCTCTATGTTTTGCTGGGGAGGGGAATGTAATCATTG
CATATGATCAAGGGTGACCAAATCCAATACTGACTGCAGAGTCATTGTTC
ATCAATAAATAACTTTGGGGTGCTGCATGGATTTATTTATTCCACGGAAA
TATCAATGCGCTTCAATTTCTACTTATGCAAATTATTCTGGATAGTATTT
CCTTCAACCTTTTAAAAATCCTCCTCTTCTCCTCCCTCCCTCACTTGCCC
TTTATTATAACACTTTTGTTTACATACCTTTN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAAGTCTTTAATTTCTTTCA
TTTTCTGCTTTGAGCCTTCTATAAGGGGTTGTTCAGTTTCCATTAATTTC
TCAGTTAGGGTTTTACTGTTGTGAACAGAGGCCATGACCACATCAAGTCT
TATAAAAGACAACATTTAATTGGGACTGGTTTACAGGGTCAGAGATTCAA
TCCAGTATCATCAAGGTGAGAACATAGCATCCAGGCAGGCATGGTACAGG
AGGAGCTGAGAGTTCTATATCTTTCATCTTAAGGCTGCTAGCAGAATACT
GGCATCTAGGCACTAGGAGTAAGGTCTTAAAGCCCACACCCAGAGTGACA
CACTTACTCTAACAAGGTCCCACCTCCAAATAGTGCTACTCCCTGGGCCA
AGCGAATACAAACTATCACATTGACTTTTAGGTAGGCTTTCTGTTGTCTC
TGTCATTGATTTCTAGCTTAAATCTTTGGTGGACTGATAGGATACAGGGT
TATTTCAACTTTCTTATATGCATTGAGTCTTTCTTTGTTATTGAGTATGT
GGNCAACTTTGGAGAATGTTCCTTGAGGTGCTGAGAATAAATATTAACGT
GTGTGTGTGTTGTGCTTTCTTTTTTTTCTCTCCACCCCCCCTCTTCTTTT
TTTTTTCCCCACTCATTCCTTTTCTACCTTTTTCCTAACCCTCCCCTTTT
TTCCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_l18.b1 MSMg01no347_l18.b1 CHROMAT_FILE:
MSMg01no347_l18.b1 PHD_FILE: MSMg01no347_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:48 2005
         (479 letters)



>mm_chr3_65033310_65034188
          Length = 879

 Score =  895 bits (463), Expect = 0.0
 Identities = 472/475 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaacaccttacaatcacagaaactctccgcagcaggcaaaatcacatgcctgc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattccaaacaccatacaatcacagaaactctccgcagcaggcaaaatcacatgcctgc 818

                                                                       
Query: 65  cagagcatgagtctcatagtcagctgctgtgggccatctgaagcagcctcataccccaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 cagagcatgagtctcatagtcagctgctgtgggccatctgaagcagcctcataccccaca 758

                                                                       
Query: 125 cctgggattaaaatgaaaacgtccttacaatatttctgtgttttaaaaagaactcaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cctgggattaaaatgaaaacgtccttacaatatttctgtgttttaaaaagaactcaaaat 698

                                                                       
Query: 185 tccaaaattgtcactacaccacagaaatcttctttgaagagactttgccatttcctgtca 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 697 tccaaaattgtcactacaccacagaaatcttctttgaagagattttgccatttcctgtca 638

                                                                       
Query: 245 atgacagatgtttgcagatgtctgcattgccatttcatttctgtagtctatattttgtct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atgacagatgtttgcagatgtctgcattgccatttcatttctgtagtctatattttgtct 578

                                                                       
Query: 305 ttatgggacgaacggaaactctctgaagaaaatgtcctctcttaggagaacccccacacg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttatgggacgaacggaaactctctgaagaaaatgtcctctcttaggagaacccccacacg 518

                                                                       
Query: 365 aagtagactcttcagtcacacacactccagctgtgtcaaacacctcttcctcacactgcc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 517 aagtagactcttcagtcacacacactccagctgtgtcaaacacctcttcctcacactgtc 458

                                                                  
Query: 425 atctgtacccagaaacaaaagatggaattgtttctgcaaagaattttctctatgt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atctgtacccagaaacaaaagatggaattgtttctgcaaagaattttctctatgt 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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