Query= MSMg01no347_l24.b1 MSMg01no347_l24.b1 CHROMAT_FILE:
MSMg01no347_l24.b1 PHD_FILE: MSMg01no347_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:49 2005
(488 letters)
>mm_chr3_41021114_41022001
Length = 888
Score = 775 bits (401), Expect = 0.0
Identities = 404/405 (99%)
Strand = Plus / Minus
Query: 84 agacgtctcagtggttaagagcactggctgctcttccggaagatctaggtttgattccta 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 agacatctcagtggttaagagcactggctgctcttccggaagatctaggtttgattccta 827
Query: 144 gtacccacatggtgactcacatttcccgtgtctacagttccatggaatcctatgccttct 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gtacccacatggtgactcacatttcccgtgtctacagttccatggaatcctatgccttct 767
Query: 204 tctgacctccatgggcattagtcatggacatggtacacagacaagcatgcaggcaataca 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tctgacctccatgggcattagtcatggacatggtacacagacaagcatgcaggcaataca 707
Query: 264 ttcatacacataaaataataaaacagattttaattttagaaaagaaatcacttgcttcca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttcatacacataaaataataaaacagattttaattttagaaaagaaatcacttgcttcca 647
Query: 324 cttgcgcattcacaccttcaattgtgtcagcatagacactttccctttgttcagcacatc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cttgcgcattcacaccttcaattgtgtcagcatagacactttccctttgttcagcacatc 587
Query: 384 attaaaactcaagcaaacagttctgccctgcatccttctaaaattttcccaacagtcact 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 attaaaactcaagcaaacagttctgccctgcatccttctaaaattttcccaacagtcact 527
Query: 444 aggtattttgttattttccagcataaggttccagacttatcatgc 488
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aggtattttgttattttccagcataaggttccagacttatcatgc 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_l24.g1 MSMg01no347_l24.g1 CHROMAT_FILE:
MSMg01no347_l24.g1 PHD_FILE: MSMg01no347_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:49 2005
(493 letters)
>mm_chr3_40986289_40987185
Length = 897
Score = 903 bits (467), Expect = 0.0
Identities = 488/497 (98%), Gaps = 4/497 (0%)
Strand = Plus / Plus
Query: 1 agctgatgcagctgtggtagacagcttgggcaagagaaaacgtcagtaattttatgtgtg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 agctgatgcagctgtggtagacagcttgggcacgagaaaacgtcagtaattttatgtgtg 260
Query: 61 tttctgtgtatagttcttcacttctgtctcctctggtgaactgtgtacttaagaaccagg 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tttctgtgtatagttcttcacttctgtctcctctggtgaactgtgcacttaagaaccagg 320
Query: 121 tcttgtctgtgttt----ctctcatctgtggctagcccggagtctgatgtttaagaggtt 176
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgtctgtgtttatctctctcatctgtggctagcccggagtctgatgtttaagaggtt 380
Query: 177 ttaataaatactacagagtgtgaagagctgatcttgattcaggttttaggtttctgcctc 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ttaataaatactacagagtgtgaagagctgatcttgatacaggttttaggtttctgcctc 440
Query: 237 tctgagccatctgaggtcagcttgacctgggatccttattcagtaggtctgggatggggg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgagccatctgaggtcagcttgacctgggatccttattcagtaggtctgggatggggg 500
Query: 297 tgcaaacacatctttggaaagctctgtgctcctagctagctcttcctgccccacatgtgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcaaacacatctttggaaagctctgtgctcctagctagctcttcctgccccacatgtgg 560
Query: 357 gctccttggcttactgccctggctatgggctgctgagtatgagaaatgaatccctgatcc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctccttggcttactgccctggctatgggctgctgagtatgagaaatgaatccctgatcc 620
Query: 417 ttgggtttgcccccgagccccttcagcgtgaccccgtctgccctcccacaggcctctctg 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 621 ttgggtttgcccccgagccccttcagcatgaccccgtctgccctcccacaggcctttctg 680
Query: 477 ttcctcttcccatgagc 493
|||||||||||||||||
Sbjct: 681 ttcctcttcccatgagc 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 897
Length adjustment: 10
Effective length of query: 483
Effective length of database: 887
Effective search space: 428421
Effective search space used: 428421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
