Query= MSMg01no347_n23.b1 MSMg01no347_n23.b1 CHROMAT_FILE:
MSMg01no347_n23.b1 PHD_FILE: MSMg01no347_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:59 2005
(490 letters)
>mm_chr3_115283130_115284016
Length = 887
Score = 924 bits (478), Expect = 0.0
Identities = 486/490 (99%), Gaps = 3/490 (0%)
Strand = Plus / Plus
Query: 1 ttctgaaataatgatgtgctgcggataaagacacaccatttattttattattctctccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgaaataatgatgtgctgcggataaagacacaccatttattttattattctctccaa 260
Query: 61 ctgaggacgggaagaagaagaagaaaaagaaacagttattcagcggcaaagataagaaac 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaggacgggaagaagaagaa---aaagaaacagttattcagcggcaaagataagaaac 317
Query: 121 aggctctttttaatacaattacaatttcaaagggcttgccaagaaaatactttcagctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggctctttttaatacaattacaatttcaaagggcttgccaagaaaatactttcagctgc 377
Query: 181 caactcagcaattttccaaagacttcctaacacaggaaaaaaaaaaagattaatggggaa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 378 caactcagcaattttccaaagacttcctaacacaggaaaaaaaaaaggattaatggggaa 437
Query: 241 aaaattatcaggcacaacttgactgtaccttacataagagtagggagcatataaaacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaattatcaggcacaacttgactgtaccttacataagagtagggagcatataaaacatt 497
Query: 301 attgcattctattctttgcttgccttagaggcccccaaaaatctgaccaggctgcccgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attgcattctattctttgcttgccttagaggcccccaaaaatctgaccaggctgcccgat 557
Query: 361 gctgtaaccttatgaataccaaatctgttccattataataccacaaggcccttctgggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gctgtaaccttatgaataccaaatctgttccattataataccacaaggcccttctgggct 617
Query: 421 ttgctcaccacagccattaccatgtttttgaaagcatttattgggtccaggtttgcacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttgctcaccacagccattaccatgtttttgaaagcatttattgggtccaggtttgcacat 677
Query: 481 aataaaatct 490
||||||||||
Sbjct: 678 aataaaatct 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 887
Length adjustment: 10
Effective length of query: 480
Effective length of database: 877
Effective search space: 420960
Effective search space used: 420960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_n23.g1 MSMg01no347_n23.g1 CHROMAT_FILE:
MSMg01no347_n23.g1 PHD_FILE: MSMg01no347_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:59 2005
(451 letters)
>mm_chr3_115463509_115464359
Length = 851
Score = 862 bits (446), Expect = 0.0
Identities = 449/450 (99%)
Strand = Plus / Minus
Query: 1 acacatgggtcttacttaaagtacatatcatggcttcagttccttttggaattttactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 acacatgggtcttacttaaagtacatatcatggcttcagttccttttggaattttactca 708
Query: 61 tgtttgtgagtgtgtgtgtctctctctctgtgtttatatatgtatgtatatatacatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgtttgtgagtgtgtgtgtctctctctctgtgtttatatatgtatgtatatatacatagc 648
Query: 121 caaggggttaaaataagaagagaggtcagacaattgacaggaagtgggcaaactgtttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 caaggggttaaaataagaagagaggtcagacaattgacaggaagtgggcaaactgtttca 588
Query: 181 agtaggaagaatatgggacaaaactaacacagtaaagagagacaaaggaagaagtggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agtaggaagaatatgggacaaaactaacacagtaaagagagacaaaggaagaagtggggc 528
Query: 241 ctcactaaagtaagcgataaaggaggggggagagtctttaaaaagttgactaggtttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctcactaaagtaagcgataaaggaggggggagagtctttaaaaagttgactaggtttcaa 468
Query: 301 agaagatgccattgaaagggtggatgtgactggcaggctactgccttggcaacctataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agaagatgccattgaaagggtggatgtgactggcaggctactgccttggcaacctataaa 408
Query: 361 gaaaccaggagtgacagttgcccatttctaagggtttgaaaagccactgagggttcagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaaaccaggagtgacagttgcccatttctaagggtttgaaaagccactgagggttcagat 348
Query: 421 acgttttctggtacacaggaaaatttaaag 450
||||||||||||||| ||||||||||||||
Sbjct: 347 acgttttctggtacaaaggaaaatttaaag 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
