BAC Information

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BAC

Clone NameMSMg01-347P21
Chromosome3 (Build37)
Map Location 122,528,056 - 122,528,387
singlet/doubletsinglet
Overlap genePde5a
Upstream geneArhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream geneLOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347P21.T7 (MSMg01no347_p21.b1)MSMg01-347P21.TJ (MSMg01no347_p21.g1)
ACCAG460199AG460200
length752741
length of high quality
(start - end)		599 (51 - 649)610 (78 - 687)
definitionCHROMAT_FILE: MSMg01no347_p21.b1 PHD_FILE: MSMg01no347_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:08 2005CHROMAT_FILE: MSMg01no347_p21.g1 PHD_FILE: MSMg01no347_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCTCTCTTTCTCAGAACTCCCACCTTCCAATTCCAGCCT
CAGCTCATAGGCCATGAGCTTCAGATTGATATGTGATGTTTCCAAACAGT
ATACAAGGGGTTATCTCTACATTCTACAGAACGAGGGGAAATATTTGTTG
ACTGTGCATCACACAAAAAAAATTGATATTTAGAATGTATAAAGAGATAA
AAGCATAAATGCAAAGAGAGCAAGAAAACAGTCAGGCAAATCATTAGTGA
AATGAATAGGAAATTCTCAAAAGTAGATGAGAAAATGGTGAAAAAACATG
CAAAGAATTTTTTCTAGCATCTTTAATCATTCTAATGAAAACTACTCAGA
GATTCCGATATCTCACCCCAGCCAGAATAGCTCTCATAAAACAATAACAG
CAGCAACACCACCACAACAAATGCTGGCAAGGATGTAAGGAAGTAGGAAT
CTTTACACTGTTACAGGGACTGTGAACTAGTGAAGCTCCTTGGGAAATCA
GTGTGGTAGTTGCTCAGCAAACTAAAATTATAACTATGATATGACCAAAC
GCACTGCTCAGGCTGGTTCCACTCTACACGGTCCTTGGTAGTGGTCTCCN
NTGGAANTGAGCTATGTCACAGCGAANNCCNNCTCCGGATACCAAACTGT
CTTAATTTACTTTCTATTGCTGTTACAGCAGGCTGGTGAGATGGCTCAGT
GG

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCAGAGCAACAGACTGACCAC
AGAACTCAGTTCTCTAACACTGGGTAATATACACTGCTACTAAAACCGAA
AACCTTAGTCTACTGAGCATCATAAGCAAGCAGGGACAAAGTAAACACTA
TTTCAAATACAGTCTTTTCCACTCCATGGTAAAAATCCTACCCCTTCTGG
ACTACTCTTCATGGTTTTCTTTCTTTGTTTCTTTGTTTCTTTGTTTCTTT
CTTTCTTTCTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCTTCCTTCCTTCCTCTCTTTCGTTTTGTTTTG
TTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCCAAGACATGGTTTCTCTGT
GTAGCTCTGGCTGTTTTAGAACTCACTCGGTAGATCAGGCTGGCCTCGAA
CTCACAGACATCTACCTGCCTCTGCCTCCTTAGCATTGGGATTAAAAGAT
GGGTGCACACAAACTAAAGCAAAACTCACAATGGTCATGTAATAAGATTC
TCAGCAGAAATACTGTTTGAACTTCAGGCCTAAAATGTGATCAGTACAGT
ATGACACCTGCATCCACTTCCCATTTTCCTTAAACGTAGCCAGGCTATGT
AAAGAAACTTGGCCAATGTACTCTTTATACTTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_p21.g1 MSMg01no347_p21.g1 CHROMAT_FILE:
MSMg01no347_p21.g1 PHD_FILE: MSMg01no347_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:08 2005
         (610 letters)



>mm_chr3_122527378_122528387
          Length = 1010

 Score =  553 bits (286), Expect = e-161
 Identities = 326/352 (92%), Gaps = 20/352 (5%)
 Strand = Plus / Minus

                                                                        
Query: 259  tccttccttccttccttccttccttccttccttcttccttccttcctctctttcgttttg 318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 1010 tccttccttccttccttccttccttccttccttcttccttccttcctctctttc------ 957

                                                                        
Query: 319  ttttgttttgttttgttttgttttgttttgtttttccaagacatggtttctctgtgtagc 378
                          ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  --------------gttttgttttgttttgtttttccaagacatggtttctctgtgtagc 911

                                                                        
Query: 379  tctggctgttttagaactcactcggtagatcaggctggcctcgaactcacagacatctac 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  tctggctgttttagaactcactcggtagatcaggctggcctcgaactcacagacatctac 851

                                                                        
Query: 439  ctgcctctgcctccttagcattgggattaaaagatgggtgcacacaaactaaagcaaaac 498
            ||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 850  ctgcctctgcctccttagcgttgggattaaaagctggatacacacaaactaaagcaaaac 791

                                                                        
Query: 499  tcacaatggtcatgtaataagattctcagcagaaatactgtttgaacttcaggcctaaaa 558
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  tcaaaatggtcatgtaataagattctcagcagaaatactgtttgaacttcaggcctaaaa 731

                                                                
Query: 559  tgtgatcagtacagtatgacacctgcatccacttcccattttccttaaacgt 610
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 730  tgtgatcagtacagtatgacacctgcatccacttcccattttccttacacgt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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