BAC Information

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BAC

Clone NameMSMg01-348B19
Chromosome3 (Build37)
Map Location 131,625,471 - 131,759,086
singlet/doubletdoublet
Overlap geneDkk2
Upstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
Downstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348B19.T7 (MSMg01no348_b19.b1)MSMg01-348B19.TJ (MSMg01no348_b19.g1)
ACCAG460290AG460291
length728770
length of high quality
(start - end)		571 (40 - 610)218 (73 - 290)
definitionCHROMAT_FILE: MSMg01no348_b19.b1 PHD_FILE: MSMg01no348_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:18 2005CHROMAT_FILE: MSMg01no348_b19.g1 PHD_FILE: MSMg01no348_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,625,471 - 131,626,037)(131,758,869 - 131,759,086)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAATGCTGTTACCTTAGCATTTCTAAGTGAACCTGAAAGTTAAGGAGAAA
GAAAATAATATACTAATCACCACAATGCAGCCCAGAGTTCCACATATCTC
AAGTAGCTGGTGGCTTAGCTCCTCTATCCACTTGGCTGTTTTGATTCTTT
GAAATATAGGAAGGTGCCGTATAAATGCTGAACATCCTAGAAGGTGTACT
TTCCTCTGCCAGGGTAATGTTTTACTCAAGTCATTCAGCTGCATGCTATA
TTGCTTAGTTTCCAACCCTTGCTTTTCTTCCTTAAAATGTGTACCCTGCT
CCATGACGTCATCTGAATTCTTCCCGAGACCCCACCCACCCTGGAGAATA
TACCTTACACGTCCTAAACCTGACTGTAAGTTGCTTGAAGGCAGGAGATC
ACATCTTCCAGAACCAAGCAACATCTTGCCTCTGCTGTAGCTCCTGAATA
TGTGCTGGTCTAATAAATCTCTATTGCAACATATGTTCTAGGAGTTGCTT
TTGGATAAGGCTTCACTAAGAACTTTCTGAAGGGCTCAGGACTGCGTGAT
TTGGCTGTTTCTCAGAAGCACCAACTGGCTTTTGCTTGTTTTTAGNTCTG
TGTATGAATTATGCATCTGAAGTTTCTCTCCTACTGTGCCTGGCTTTGAT
GACATCCCAAGCTTTCAGTTCTCTCTAT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTACCTTGGGTACTATCTGTGCAATA
ACATTGCTCTTGTTTTGAGAATATTCTCGACCTCACTCCCTCAAATATAA
GATGAAGAAATAAAACTGAATCATTACCAATGTGCCTCCTTGGTATTAAT
TTAGTCTCTTTTATGAGTTCTTGAAGCATTTGAATTTGTAGACGATAATA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNN
NNNNNNNNNNNNNNNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNN
TTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTNTTTNNNNNNT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTNNTTT
NTNNTTNNTTTTNTTTTTTNNTTTNTNTTTTTTTTTTTTTTTTTNNTTTT
TTTTTTTNTTNNTTTTTTTTTTNNTTTTTTTTTTTTTNNNNTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNNTTNNNNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNNNTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTNTTTNNTTTTTT
TTTTTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNNTTTNNNTTTNTNTNNNTTTTTTNTTTTNTTTTTTT
TTTTTTNTNNTNTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_b19.b1 MSMg01no348_b19.b1 CHROMAT_FILE:
MSMg01no348_b19.b1 PHD_FILE: MSMg01no348_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:18 2005
         (571 letters)



>mm_chr3_131625267_131626237
          Length = 971

 Score = 1065 bits (551), Expect = 0.0
 Identities = 563/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaatgctgttaccttagcatttctaagtgaacctgaaagttaaggagaaagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaatgctgttaccttagcatttctaagtgaacctgaaagttaaggagaaagaa 264

                                                                       
Query: 65  aataatatactaatcaccacaatgcagcccagagttccacatatctcaagtagctggtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataatatactaatcaccacaatgcagcccagagttccacatatctcaagtagctggtgg 324

                                                                       
Query: 125 cttagctcctctatccacttggctgttttgattctttgaaatataggaaggtgccgtata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttagctcctctatccacttggctgttttgattctttgaaatataggaaggtgccgtata 384

                                                                       
Query: 185 aatgctgaacatcctagaaggtgtactttcctctgccagggtaatgttttactcaagtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgctgaacatcctagaaggtgtactttcctctgccagggtaatgttttactcaagtca 444

                                                                       
Query: 245 ttcagctgcatgctatattgcttagtttccaacccttgcttttcttccttaaaatgtgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcagctgcatgctatattgcttagtttccaacccttgcttttcttccttaaaatgtgta 504

                                                                       
Query: 305 ccctgctccatgacgtcatctgaattcttcccgagaccccacccaccctggagaatatac 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctgctctatgacgtcatctgaattcttcccgagaccccacccaccctggagaatatac 564

                                                                       
Query: 365 cttacacgtcctaaacctgactgtaagttgcttgaaggcaggagatcacatcttccagaa 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttacacatcctaaacctgactgtaagttgcttgaaggcaggagatcacatcttccagaa 624

                                                                       
Query: 425 ccaagcaacatcttgcctctgctgtagctcctgaatatgtgctggtctaataaatctcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaagcaacatcttgcctctgctgtagctcctgaatatgtgctggtctaataaatctcta 684

                                                                       
Query: 485 ttgcaacatatgttctaggagttgcttttggataaggcttcactaagaactttctgaagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 685 ttgcaacatatgttctaggagttgcttttggataaggcttcactaagaactttctgaagt 744

                                      
Query: 545 gctcaggactgcgtgatttggctgttt 571
           |||||||||| ||||||||||||||||
Sbjct: 745 gctcaggacttcgtgatttggctgttt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_b19.g1 MSMg01no348_b19.g1 CHROMAT_FILE:
MSMg01no348_b19.g1 PHD_FILE: MSMg01no348_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:18 2005
         (218 letters)



>mm_chr3_131758709_131759326
          Length = 618

 Score =  406 bits (210), Expect = e-118
 Identities = 216/218 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaccttgggtactatctgtgcaataacattgctcttgttttgagaatattctcgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttttaccttgggtactatctgtgcaataacattgctcttgttttgagaatattctcgacc 319

                                                                       
Query: 61  tcactccctcaaatataagatgaagaaataaaactgaatcattaccaatgtgcctccttg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 318 tcactccctcaaatataagatgaagaagtaaaactgaatcattaccaatgtgcctccttg 259

                                                                       
Query: 121 gtattaatttagtctcttttatgagttcttgaagcatttgaatttgtagacgataatatg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtatttatttagtctcttttatgagttcttgaagcatttgaatttgtagacgataatatg 199

                                                 
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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