BAC Information

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BAC

Clone NameMSMg01-348G21
Chromosome3 (Build37)
Map Location 88,112,975 - 88,113,421
singlet/doubletsinglet
Overlap geneCct3
Upstream geneCd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik
Downstream gene0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348G21.T7 (MSMg01no348_g21.b1)MSMg01-348G21.TJ (MSMg01no348_g21.g1)
ACCAG460528AG460529
length747767
length of high quality
(start - end)		450 (37 - 486)165 (67 - 231)
definitionCHROMAT_FILE: MSMg01no348_g21.b1 PHD_FILE: MSMg01no348_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:43 2005CHROMAT_FILE: MSMg01no348_g21.g1 PHD_FILE: MSMg01no348_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
TGATACTCTTAGGTTTTTGTTTCCAGGCTCTAAGGTAGTCCAGTTCTTCT
GTCTAGTTCTAAGTAAATAAGGACACCCTACTCTGAATAGGAATGACCAT
GCCAGACACCTAACTCTCAAGCACATACTGGACAAGCTTACCTTTTCTAC
CCTTGCATATTTTTTGATGTCAATTTCCTTTCTGCCATTCTCTTCAAACT
GCACAGTCTTAACAGCATCCAGTGCAATGTTGCATGCCAAGGAGGACCAC
CGACTGATGACTTTTGTAGTAATAGAGCTATTGATGATGCTCAACATCAT
CTCACGGTTATTGACATCAACAGGAGTACTGGAAAAAGAAAGCCAGAAAA
CAGTGAACATAAAACATTTAACACAGTCACTCATGTAAGCCTCAAAGAGC
ATAAGAGCATGCCAAGAACACGCCAAGAGGCAGAATGAGGTGGTTAAAGT
GACAAGACATCTTGCTAAACTTTCAAATACTGCTAAAATTCCTAAAACAT
TTTACATGGNCAAACAGATTTTAGGGAAGAAGCAACAGCTTTCAAAAGCA
TCATCTAAAGTAAATGTTCTAAGCGGCTGGAGAAATGGGTCACCAGTTAA
AAAAACCAACTGCTATCTTATAGGGCCGAGTTAAATTCCCCGCAACCCAT
AGGGGTGCTCAACACCTGAATGGGATTAATGCCCCTCCTTGGGGGCT

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTGGGATCCCTCTGCCTCTGCCTCCTCTGCCTC
TGCTGGGATTAAAGGCATGTCCCACCATGCTCAGCTGTTTTCTATAAAAA
TACAGACATATTGTAAGACTGTGCTTTCATTTTATCCCAGGTGTAGGGAT
GTGTGTGTGTGTGTGTGTGTGTGTGTGNGNNNNNNNNNNNNNNNTTTNTT
TTTTNNNTTTTTNTTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNN
NTTNNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTNT
NNNTTTTTTTTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTTNNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC
NTTTTTTTTTNTTTTTNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNTN
TNTTTTTTTTTTTTTTTTTNTTTNTNNTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNNTTTTTTTTTTTTTTTTTNTNNTTTTTTTTTTTTNNNNTN
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNNTTTTTTTTNTTTTTTT
TTTNTTTTTTTTTTTCCNNTTTCCCCCTCCTCTTTCCCCCCCCCCCCTTT
TTTTTCTCTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_g21.b1 MSMg01no348_g21.b1 CHROMAT_FILE:
MSMg01no348_g21.b1 PHD_FILE: MSMg01no348_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:43 2005
         (450 letters)



>mm_chr3_88112772_88113621
          Length = 850

 Score =  857 bits (443), Expect = 0.0
 Identities = 446/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccttgatactcttaggtttttgtttccaggctctaaggtagtccagttcttc 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 650 ggaattctccttgatactcttaggttattgtttccaggctctaaggtagtccagttcttc 591

                                                                       
Query: 64  tgtctagttctaagtaaataaggacaccctactctgaataggaatgaccatgccagacac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgtctagttctaagtaaataaggacaccctactctgaataggaatgaccatgccagacac 531

                                                                       
Query: 124 ctaactctcaagcacatactggacaagcttaccttttctacccttgcatattttttgatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctaactctcaagcacatactggacaagcttaccttttctacccttgcatattttttgatg 471

                                                                       
Query: 184 tcaatttcctttctgccattctcttcaaactgcacagtcttaacagcatccagtgcaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tcaatttcctttctgccattctcttcaaactgcacagtcttaacagcatccagtgcaatg 411

                                                                       
Query: 244 ttgcatgccaaggaggaccaccgactgatgacttttgtagtaatagagctattgatgatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttgcatgccaaggaggaccaccgactgatgacttttgtagtaatagagctattgatgatg 351

                                                                       
Query: 304 ctcaacatcatctcacggttattgacatcaacaggagtactggaaaaagaaagccagaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctcaacatcatctcacggttattgacatcaacaggagtactggaaaaagaaagccagaaa 291

                                                                       
Query: 364 acagtgaacataaaacatttaacacagtcactcatgtaagcctcaaagagcataagagca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acagtgaacataaaacatttaacacagtcactcatgtaagcctcaaagagcataagagca 231

                                      
Query: 424 tgccaagaacacgccaagaggcagaat 450
           |||||||||||||||||||||||||||
Sbjct: 230 tgccaagaacacgccaagaggcagaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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