Query= MSMg01no348_h20.b1 MSMg01no348_h20.b1 CHROMAT_FILE:
MSMg01no348_h20.b1 PHD_FILE: MSMg01no348_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:48 2005
(525 letters)
>mm_chr3_125004507_125005431
Length = 925
Score = 878 bits (454), Expect = 0.0
Identities = 495/522 (94%), Gaps = 24/522 (4%)
Strand = Plus / Plus
Query: 5 gaattcctggaatctcacagatcacaaagtttggcatatgcaccctgaaaaagattccgt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcctggaatctcacagatcacaaagtttggcatatgcaccctgaaaaagattccat 264
Query: 65 acccatctaaggatagagcacaagaattggtatcatcatctttgatatctgcctcagact 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccgtctaaggatagagcacaagaattggtatcatcatctttgatatctgcctcagact 324
Query: 125 ggagtgtgaggattggtacctataattgtcttctgatctatatgcacatgacatcgaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagtgtgaggattggtacctataattgtcttctgatctatatgcacatgacatcgaagg 384
Query: 185 gattcatctacattttcacacacaaatgcatgcacacacatagagagagagagagagaga 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 gattcatctacattttcacacacaaatgcatgcacacacatacagagagagagagagaga 444
Query: 245 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 304
|||||||||||||||||||||||||||||||||||| | |
Sbjct: 445 gagagagagagagagagagagagagagagagagaga-a---------------------a 482
Query: 305 accagaacagagagagggaaaaca-aaaaatatatatatacttacacaaatataaatgaa 363
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 483 accagaacagagagagggaaaacagaaaaa-atatatatacttacacaaatataaatgaa 541
Query: 364 aatatgttttatttatttttaactggtttattaaatatcaaatttgtgtatatcagtgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aatatgttttatttatttttaactggtttattaaatatcaaatttgtgtatatcagtgga 601
Query: 424 cttaatgtgatatttccacacacacatacacatacacacacatacattgtggaacatttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cttaatgtgatatttccacacacacatacacatacacacacatacattgtggaacatttg 661
Query: 484 catatagttacatttgaaccaattgcagcaattacagcagtc 525
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 catatagttacatttgaaccaattgcagcaattacagcagtc 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_h20.g1 MSMg01no348_h20.g1 CHROMAT_FILE:
MSMg01no348_h20.g1 PHD_FILE: MSMg01no348_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:48 2005
(448 letters)
>mm_chr3_125086402_125087249
Length = 848
Score = 820 bits (424), Expect = 0.0
Identities = 442/448 (98%)
Strand = Plus / Minus
Query: 1 tctttgctctattctcagtttcctggctacttttttccttaagagttgttatatacattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tctttgctctattctcagtttcctggctacttttttccttaagagttgttatatacattc 773
Query: 61 ctgtctatataactaaagacataagtatgacctgctcagtctgtacactattcttctcat 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 772 ctgtctatataactaaagacataagtatgacctgctcagtctgaacactattcttctcat 713
Query: 121 gcatgatttcatgctgtctatttgaaattaggtaaacacttgatgtgttctattccatgg 180
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 712 gcatggtttcatgctgtctatttgaaattagataaacacttgatgtgttctattccatgg 653
Query: 181 aagatatgttcatagtgactgcatttatggtaagtttagaaggccatcatatttcctgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagatatgttcatagtgactgcatttatggtaagtttagaaggccatcatatttcctgta 593
Query: 241 aaacagcagtgtcaaagaaaggaaatgtaagtgcaaatacatttatagctaagagcactc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaacagcagtatcaaagaaaggaaatgtaagtgcaaatacatttatagctaagagcactc 533
Query: 301 aattcatcatggcatggtttagcctgattaaagtatggacaaattaatttttcattggct 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 532 aattcatcatggcatggtttagtctgattaaagtatggacaaattaatttttcattggct 473
Query: 361 ctttcttacaggatcatttcattttactcagacaaaattatgaagccaagaaacaaaaac 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 472 ctttcttacaggatcatttcattttactcagacaaaaatatgaagccaagaaacaaaaac 413
Query: 421 ctagtgcatcttaatcgaaacaaagcag 448
||||||||||||||||||||||||||||
Sbjct: 412 ctagtgcatcttaatcgaaacaaagcag 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
