Query= MSMg01no348_n18.b1 MSMg01no348_n18.b1 CHROMAT_FILE:
MSMg01no348_n18.b1 PHD_FILE: MSMg01no348_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:18 2005
(604 letters)
>mm_chr3_23656757_23657761
Length = 1005
Score = 1069 bits (553), Expect = 0.0
Identities = 597/621 (96%), Gaps = 18/621 (2%)
Strand = Plus / Plus
Query: 1 cagccacatgtgtctacatttgatgaatgagaagcatccttaaatatctctcattctttt 60
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cagccacatgtgcctacatttgatgaatgagaagcatccttaaagatctctcattctttt 260
Query: 61 aatgtatttgatatcacacttcaatgatttttgatacttg-agttttcttctagatgctg 119
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 261 aatgtatttgatatcacacttcaatgatttttgatacttgca-ttttcttctagatgctg 319
Query: 120 caccctgtaatgtgtacaagctgttgtcaagtgtggt-taaaaaaaaaaagttaagtttg 178
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 320 caccctgtaatgtgtacaagctgttgtcaagtgtggtaaaaaaaaaaaaagttaaggttg 379
Query: 179 ggaaaatggtaatacttggtctggtgagcatggtgtatataaataactctggtcttggga 238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 ggaaaatggtaatacttggtctggtgagcatggcgtatataaataactctggtcttggga 439
Query: 239 gcatgggtcctcctatgtatgatagttaatgttcatttttaacttgattggatcttggtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcatgggtcctcctatgtatgatagttaatgttcatttttaacttgattggatcttggtt 499
Query: 299 tcccctaaagacaagcctgtaagcatgactttgaagggatgtgtatattaggttagcctg 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 tcccctaaagacaagcctgtaagcatgactttgaagagatgtgtatattaggttagcctg 559
Query: 359 tgagcttacttgttgaaggctgtctatagaaggttaggctctgaatatgcctataagtca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgagcttacttgttgaaggctgtctatagaaggttaggctctgaatatgcctataagtca 619
Query: 419 tgtctagactgtggtcttaagataacctttgtgtacaggcacaactataagatgggctgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtctagactgtggtcttaagataacctttgtgtacaggcacaactataagatgggctgg 679
Query: 479 ggtactgcagttaataaaaaaa---------------caggtaaggaatgagctgcacat 523
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 ggtactgcagttaataaaaaaaaaaaaaaaaaaaaaacaggtaaggaatgagctgcacat 739
Query: 524 tggcattcatcagtctctacttccagacagtagattcaatgaaattatctgctgccagct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tggcattcatcagtctctacttccagacagtagattcaatgaaattatctgctgccagct 799
Query: 584 cttgatgccatgacttccagc 604
|||||||||||||||||||||
Sbjct: 800 cttgatgccatgacttccagc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space: 591030
Effective search space used: 591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_n18.g1 MSMg01no348_n18.g1 CHROMAT_FILE:
MSMg01no348_n18.g1 PHD_FILE: MSMg01no348_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:18 2005
(543 letters)
>mm_chr3_23806796_23807739
Length = 944
Score = 1007 bits (521), Expect = 0.0
Identities = 538/544 (98%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 1 tgagtctgccaggttcacctctgggtctctttcaaagtagattctcttaaaaagtgttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgagtctgccaggttcacctctgggtctctttcaaagtagattctcttaaaaagtgttga 685
Query: 61 ttttccttgtgttgccaagccacttaatcaaagcatcttcaagctggctatgttaagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttccttgtgttgccaagccacttaatcaaagcatcttcaagctggctatgttaagagt 625
Query: 121 cactatgtttttggtagacatgaaaggttctgaaaagtgctacccacaaagttagagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cactatgtttttggtagacatgaaaggttctgaaaagtgctacccacaaagttagagagc 565
Query: 181 aacaaagaatccttgaataaaaag-aaaaaaatggcaatatattaaaaatatccaatgaa 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 aacaaagaatccttgaataaaaagaaaaaaaatggcaatatattaaaaatatccaatgaa 505
Query: 240 tgtgacctttgcatcacatatatagcccattgtaaggcatataatagaattagttttcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgacctttgcatcacatatatagcccattgtaaggcatataatagaattagttttcaa 445
Query: 300 tctgtgtgaggttcttatatatgttatcaaaatgttcctaattttagaaccaaacctctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgtgtgaggttcttatatatgttatcaaaatgttcctaattttagaaccaaacctctt 385
Query: 360 cagaataaaaatgctgtcagtggtcagagaagaagcagcagaaacctttctatttcagga 419
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 cagaatcaaaatgctgtcagtggtcagagaagaagcagcagaaatctttctatttcagga 325
Query: 420 gatttcaaatactctaggccagctaaatatctattagtgagcctgatatcagaacaaccc 479
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 gatttcaaataccctaggccagctaaatatctattagtgagcctgacatcagaacaaccc 265
Query: 480 ctctgggagaggatagaccaagtccaagcagtanagccttaggtcatgcatttagttcta 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 ctctgggagaggatagaccaagtccaagcagtaaagccttaggtcatgcatttagttcta 205
Query: 540 agaa 543
||||
Sbjct: 204 agaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
