Query= MSMg01no349_b03.b1 MSMg01no349_b03.b1 CHROMAT_FILE:
MSMg01no349_b03.b1 PHD_FILE: MSMg01no349_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:35 2005
(572 letters)
>mm_chr3_152742820_152743791
Length = 972
Score = 1054 bits (545), Expect = 0.0
Identities = 563/569 (98%)
Strand = Plus / Minus
Query: 4 ggaattccttgaatgtcagatgatactgtttgctcctgagttcacacagcatggtagtgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaattccttgaatgtcagatgatactgtttgctcctgagttcacacagcatggtagtgt 562
Query: 64 actaatactgctggtggcagtgaacctttacatatgcaatagcagagtatatctatgtgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 actaatactgctggtggcagtgaacctttacatatgcaatagcagagtatacctatgtgt 502
Query: 124 tgacataggaaatattgataagaatgtggacagctgtatcatttgtagcatccttacaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacataggaaatattgataagaatgtggacagctgtatcatttgtagcatccttacaat 442
Query: 184 atattcagtaacctctgtttataagctgcaacgccaagagaaaaagtcatgccacagaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattcagtaacctctgtttataagctgcaacgccaagagaaaaagtcatgccacagaga 382
Query: 244 cttgatgaagcatgtcataactcacacgccatcttaaaacatatattaaaatgatagctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgatgaagcatgtcataactcacacgccatcttaaaacatatattaaaatgatagctt 322
Query: 304 tggggacacacacatatatcatgagctctgctggtttcagagggctgctgtaaccaagtc 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tggggacacacacatatatcatgagctctgctggtttcagaaggctgctgtaaccaagtc 262
Query: 364 tcacaatggggtggcttccccaacagaaactgactaccttgcagccctgttgactgatgt 423
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 261 tcacaatggggtggcttccccaacagaaactgactatcgtgcagccctgttgactgatgt 202
Query: 424 gtcagcaggattagttctctctgaggctgtgaggagaaagaatgaaggaaactgagagcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagcaggattagttctctctgaggctgtgaggagaaagaatgaaggaaactgagagcc 142
Query: 484 agatgaacaaacagtctgtgatcaaatgatggatgcacttgcagcctggctcaagtcctc 543
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agatgaacaaacactctgtgatcaaatgatggatgcacttgcagcctggctcaagtcctc 82
Query: 544 agacctctgattatcaccctttcctttcc 572
|||||||||||||||||||| ||||||||
Sbjct: 81 agacctctgattatcaccctctcctttcc 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_b03.g1 MSMg01no349_b03.g1 CHROMAT_FILE:
MSMg01no349_b03.g1 PHD_FILE: MSMg01no349_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:35 2005
(533 letters)
>mm_chr3_152586846_152587778
Length = 933
Score = 872 bits (451), Expect = 0.0
Identities = 524/577 (90%), Gaps = 44/577 (7%)
Strand = Plus / Plus
Query: 1 tcttaacatgtctccctataaaggcagccagccttcccctctcctttcattcctcatcaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tcttaacatgtctccctataaaggcagccagccttcccctctcctttcattcctcatcag 216
Query: 61 acttcctggaagaatgcagcacatttctgacttcaccctccctgaatctcattccctggt 120
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 217 acttcctggaagaatgcagcacatttctgacttcactctccctgaatttcattccctggt 276
Query: 121 ggagcatccaagtgctctgtctctgtttctgtctc------------------------- 155
|||||||||||||||||||||||||||||||||||
Sbjct: 277 ggagcatccaagtgctctgtctctgtttctgtctctctgtctgtctctctctctgtctgt 336
Query: 156 -------------------tctgtctgtctctctttgtctttctgtctctctgtgtctct 196
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgtctgtctgtctgtctgtctgtctgtctctctttgtctttctgtctctctgtgtctct 396
Query: 197 gcctctgtctctctcgtcacctatgatgtcttattggttgagccagtgacttccctgtcc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcctctgtctctctcgtcacctatgatgtcttattggttgagccagtgacttccctgtcc 456
Query: 257 ccactctgagggactgtaccccatccatcagaaatcctcccctttgatctcagccttcac 316
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 457 ccactctgagggactgtaccccatccctcagaaatcctcccctttgatctcagccttcac 516
Query: 317 atttttacaatgttctttagtcctctcgtgaccagtttttaggtttctggtctaagaaca 376
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atttttacaatgttcttttggcctctcgtgaccagtttttaggtttctggtctaagaaca 576
Query: 377 tttcccctttagttctttacttcttcacacaggacttgcaaataaaatttaacagagaca 436
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttcccccttagttctttacttcttcacacaggacttgcaaataaaatttaacagagaca 636
Query: 437 gaatagcaagcacgtgtgtaaaatggagaggagacgctgaagagatggaaagcaacagca 496
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggatagcaagcacgtgtgtaaaatggagaggagacgctgaagagatggaaagcaacagca 696
Query: 497 gtggccacagcaagtggtgataaggcattttaacttg 533
||||||||||||||||||||||||| |||||||||||
Sbjct: 697 gtggccacagcaagtggtgataaggaattttaacttg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
