Query= MSMg01no349_f24.b1 MSMg01no349_f24.b1 CHROMAT_FILE:
MSMg01no349_f24.b1 PHD_FILE: MSMg01no349_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(516 letters)
>mm_chr3_117653828_117654747
Length = 920
Score = 663 bits (343), Expect = 0.0
Identities = 401/429 (93%), Gaps = 18/429 (4%)
Strand = Plus / Minus
Query: 7 gaattcttgttgaggaaaagggaagggcgtttttaagtagaggcacagcaaaattcttct 66
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 418 gaattcttgttgaggaaaagggaagggtgtttttaagtagaggcacagcaaaattcttct 359
Query: 67 gtcacatgtcatttctctgtacctacatggttcatgcttttcatgtctccacactcttcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 358 gtcacatgtcatttctctgtacctacatggttcatgcttttcatgtctccatactcttcc 299
Query: 127 agagaatgcttctcctgcttagaattttcctcacta----ggcaaaaatgtgacttccat 182
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 298 agagaatgtttctcctgcttagaattttcctcactatctaggcaaaaatgtgacttccat 239
Query: 183 aaaccctagtaatgcttctgcctgactcaggttttgtttgtttgtttgtttgtttgtttg 242
|||||||| |||||||||||||| ||||||| || || |||||||||||||
Sbjct: 238 aaaccctacaaatgcttctgcctggctcaggt---gt--gt------gtttgtttgtttg 190
Query: 243 tttgtttgtttttacttttatattcccggaacacatttttgaaaactacagttagagcca 302
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 189 tttgtttgtttttacttttatattcctggaacacatttttgaaaactacagttagagcca 130
Query: 303 ttgagtgcttgctcaattcattttttttta---aagagttacttattgttatatgtaagt 359
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 129 ttgagtgcttgctcaattcttttttttttttttaagagttacttattgttatatgtaagt 70
Query: 360 acactgtagctgtcttcaggcacatggggagagggcatcagatcccattatagatggttg 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 69 acactgtagctgtcttcaggcacatgggaagagggcatcagatcccattatagatggttg 10
Query: 420 tgagccacc 428
|||||||||
Sbjct: 9 tgagccacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 920
Length adjustment: 10
Effective length of query: 506
Effective length of database: 910
Effective search space: 460460
Effective search space used: 460460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_f24.g1 MSMg01no349_f24.g1 CHROMAT_FILE:
MSMg01no349_f24.g1 PHD_FILE: MSMg01no349_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(472 letters)
>mm_chr3_117447984_117448855
Length = 872
Score = 866 bits (448), Expect = 0.0
Identities = 466/472 (98%)
Strand = Plus / Plus
Query: 1 caggcataacatcaaaattgcttcctggcttcttctgagtcaggaatcaagacttactag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcataacatcaaaattgcttcctggcttcttctgagtcaggaatcaagacttactag 260
Query: 61 acttgaacacaaaattatttctcatccccagtttctgcagatggcaagtgatttttgtat 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgaacacaaaatcatttctcatccccagtttctgcagatggcaagtgatttttgtat 320
Query: 121 taaagtgtaatgccaaggttcaaatcctgataaacttcattgttgggatttcagaaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagtgtaatgccaaggttcaaatcctgataaacttcattgttgggatttcagaaagtt 380
Query: 181 ttagaagagtgcttcaggaataaatactcttaaatagaagacacttcaaggtcttaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagaagagtgcttcaggaataaatactcttaaatagaagacacttcaaggtcttaagaa 440
Query: 241 aatgtgttgtgggtactcagttccaaacacaggacttgtagaactttagtagcctttgtc 300
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct: 441 aatgtgttgtgggtactcagttccaaacacagaacttgtagaactttaggagactttgtc 500
Query: 301 ttttggctggctgtcatggatggacctgaagagagaataggacccatcttagtagtgctc 360
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tcttggctggctgtcatggatggacctgaagagagaacaggacccatcttagtagtgctc 560
Query: 361 acactcgtgtgttagagggacccaataagactcacaatttttaagaaaatcattctggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactcgtgtgttagagggacccaataagactcacaatttttaagaaaatcattctggtt 620
Query: 421 caatcagccttgtagagggaaagaggcagagattatacaaagcccaagcacc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatcagccttgtagagggaaagaggcagagattatacaaagcccaagcacc 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
