Query= MSMg01no349_k10.b1 MSMg01no349_k10.b1 CHROMAT_FILE:
MSMg01no349_k10.b1 PHD_FILE: MSMg01no349_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:19 2005
(675 letters)
>mm_chr3_19413414_19414490
Length = 1077
Score = 1199 bits (620), Expect = 0.0
Identities = 658/672 (97%), Gaps = 4/672 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcctcagtaactgct---aaaaaaaaaaaaaaagtgtgaagcccacggagat 60
||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||
Sbjct: 874 ggaattcagcctcag-aaatgctaaaaaaaaaaaaaaaaaagtgtgaagcccacagagat 816
Query: 61 gagtgatgagatgacagaagttgaaagtagccagatccatctgggttttgggggatgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gagtgatgagatgacagaagttgaaagtagccagatccatctgggttttgggggatgcag 756
Query: 121 aaaagaaatgagggaaaagaagaagaaaagcataaagggccttgaagaccaagcaattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aaaagaaatgagggaaaagaagaagaaaagcataaagggccttgaagaccaagcaattgg 696
Query: 181 attctctgttttgcaaacatctattttcaaactggggagtaacaatctgttttggaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 attctctgttttgcaaacatctattttcaaactggggagtaacaatctgttttggaaaca 636
Query: 241 gtatccaatgggttgcagagaactgaaggaaggagatgagtagaaaagatgaccaggtag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 635 gtatccaatgggttgcagagaactgaaggaaggagatgagtagaaaagatgaccagttag 576
Query: 301 cagcaggcagagatcactaggaatgataaatttgaaggcatagagctgtgagtttatggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cagcaggcagagatcactaggaatgataaatttgaaggcatagagctgtgagtttatggg 516
Query: 361 taagtggacaaaggcagagagacaggtatgcaagaatacttcagatacccactatgactt 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 515 taagtggacaaaggcagagagacaggtatgcaagaatactccagatacccactatgactt 456
Query: 421 ccagtacagtctctggttgaggcaggaatctacaaggggtgcgaattggtggaagtcaat 480
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 455 ccagtacagtctctggttgaggcaggaatctacaaagggtgcaaattggtggaagtcaat 396
Query: 481 aatttagatttggaatatgcagactttagggtatttgctcacaagcaagccagcataaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aatttagatttggaatatgcagactttagggtatttgctcacaagcaagccagcataaag 336
Query: 541 gtttagttccaacctagccatagctacagtatgtgaccccttacagataccttctcacat 600
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 335 gtttagttccaacctagccatagctacagtatgtgaccccttacagatactttctcacac 276
Query: 601 ctttcccctccttccttgtgtctgtttttctacagctcctgttttctatgtcccagtcaa 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 275 ctttcccctccttccttgtgtctgtgtttctacagctcctgttttctatgtcccagtcaa 216
Query: 661 gggaaagaaact 672
||||| ||||||
Sbjct: 215 gggaaggaaact 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1077
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1067
Effective search space: 709555
Effective search space used: 709555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_k10.g1 MSMg01no349_k10.g1 CHROMAT_FILE:
MSMg01no349_k10.g1 PHD_FILE: MSMg01no349_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:19 2005
(588 letters)
>mm_chr3_19319152_19320139
Length = 988
Score = 1091 bits (564), Expect = 0.0
Identities = 585/598 (97%), Gaps = 10/598 (1%)
Strand = Plus / Plus
Query: 1 cagggcaggaaagcagaagtgggtgagttggtgagcaggcaaagagggaatgggataggg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 191 cagggcaggaaagcagaagtgggtgggttggtgagcaggcaaagagggaatgggataggg 250
Query: 61 ggctttctgaggagaaatgaggaaaggggattacatttgttatgtaaataaagaaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggctttctgaggagaaatgaggaaaggggattacatttgttatgtaaataaagaaaatat 310
Query: 121 ctaataaaaaataaaatagaaaaaaaagaagaaaaaagaattttagtagcaatctgtatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 311 ctaataaaaaataaaatagaaaaaaaagaagaaaaaagaattttagtagcaatatgtatt 370
Query: 181 cttgtttaagagagatttaaacccttactcccagccctagaccgtgtttactgatgttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cttgtttaagagagatttaaacccttactcccagccctagaccgtgtttactgatgttag 430
Query: 241 gttgtgcaggtgtgggtaacgctgtaagtgtataatcacagactctccagtcacatttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttgtgcaggtgtgggtaacgctgtaagtgtataatcacagactctccagtcacatttgt 490
Query: 301 ccaaatccttcaatgactaatgcccaacgagacgttcttgtcagacccagaagccagtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccaaatccttcaatgactaatgcccaacgagacgttcttgtcagacccagaagccagtgc 550
Query: 361 aaattacacacagcacttgtgtgctgttctgttgtctccttaactctagaacagtccttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaattacacacagcacttgtgtgctgttctgttgtctccttaactctagaacagtccttc 610
Query: 421 cctgtgtcagcgaggaatctcacactcttttttttttttt----------gtagcagtgc 470
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 611 cctgtgtcagcgaggaatctcacactctttttttttttttttttttttttgtagcagtgc 670
Query: 471 ttcatttggctctatctggttatttctgcaggtttcttttcagaattccccagggccaag 530
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 671 ttcatttggctctatctggttatttctgcaggttgcttttcagaattccccagggccaag 730
Query: 531 tatgatatgaaagaggcacctaagttcttctgtctagctgctacccatgttttccatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tatgatatgaaagaggcacctaagttcttctgtctagctgctacccatgttttccatg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
